Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04345

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04340 and AO356_04345 are separated by 318 nucleotidesAO356_04345 and AO356_04350 are separated by 12 nucleotidesAO356_04350 and AO356_04355 are separated by 32 nucleotides AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936 _04340 AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797 _04345 AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586 _04350 AO356_04355: AO356_04355 - MFS transporter, at 990,619 to 991,116 _04355 Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 988.293 kb on + strand, within AO356_04340at 988.293 kb on + strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.413 kb on + strand, within AO356_04340at 988.414 kb on - strand, within AO356_04340at 988.581 kb on + strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340at 988.955 kb on + strandat 988.955 kb on + strandat 988.955 kb on + strandat 988.955 kb on + strandat 988.956 kb on - strandat 988.956 kb on - strandat 988.956 kb on - strandat 989.036 kb on - strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.180 kb on + strandat 989.180 kb on + strandat 989.181 kb on - strandat 989.181 kb on - strandat 989.181 kb on - strandat 989.219 kb on + strandat 989.220 kb on - strandat 989.220 kb on - strandat 989.421 kb on + strand, within AO356_04345at 989.493 kb on + strand, within AO356_04345at 989.493 kb on + strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.716 kb on - strand, within AO356_04345at 989.780 kb on + strandat 989.780 kb on + strandat 989.781 kb on - strandat 989.781 kb on - strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.785 kb on - strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.811 kb on + strandat 990.039 kb on + strand, within AO356_04350at 990.138 kb on - strand, within AO356_04350at 990.225 kb on + strand, within AO356_04350at 990.355 kb on + strand, within AO356_04350at 990.366 kb on - strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.575 kb on + strandat 990.576 kb on - strandat 990.620 kb on + strandat 990.620 kb on + strandat 990.620 kb on + strandat 990.621 kb on - strandat 990.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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988,293 + AO356_04340 0.50 -0.7
988,293 + AO356_04340 0.50 +0.5
988,294 - AO356_04340 0.50 -0.5
988,294 - AO356_04340 0.50 -0.0
988,294 - AO356_04340 0.50 -0.7
988,294 - AO356_04340 0.50 -0.2
988,294 - AO356_04340 0.50 -1.2
988,294 - AO356_04340 0.50 -0.3
988,294 - AO356_04340 0.50 -0.7
988,413 + AO356_04340 0.59 +0.6
988,414 - AO356_04340 0.59 +0.4
988,581 + AO356_04340 0.72 +0.3
988,582 - AO356_04340 0.72 -0.7
988,582 - AO356_04340 0.72 +0.1
988,955 + +1.1
988,955 + -2.9
988,955 + -0.1
988,955 + -0.1
988,956 - +0.2
988,956 - +0.2
988,956 - -0.1
989,036 - +0.2
989,145 + +0.5
989,145 + +0.5
989,145 + +0.8
989,145 + +1.5
989,146 - -1.2
989,146 - -0.2
989,146 - +0.4
989,146 - +0.0
989,160 + -0.2
989,160 + +0.6
989,160 + +0.2
989,160 + +0.6
989,160 + -0.3
989,160 + -0.2
989,160 + -0.1
989,160 + -0.4
989,160 + +0.1
989,160 + +0.7
989,160 + -0.0
989,160 + -0.8
989,161 - -0.2
989,161 - -0.3
989,161 - -0.2
989,161 - -0.7
989,161 - -0.0
989,161 - +0.5
989,180 + -0.1
989,180 + +0.4
989,181 - -0.7
989,181 - -0.7
989,181 - -0.3
989,219 + +1.4
989,220 - -1.0
989,220 - -0.7
989,421 + AO356_04345 0.31 -0.8
989,493 + AO356_04345 0.44 +0.3
989,493 + AO356_04345 0.44 +1.9
989,494 - AO356_04345 0.44 +0.5
989,494 - AO356_04345 0.44 +0.3
989,494 - AO356_04345 0.44 +1.2
989,494 - AO356_04345 0.44 -0.2
989,716 - AO356_04345 0.85 +0.7
989,780 + +0.0
989,780 + -0.1
989,781 - +0.7
989,781 - +0.9
989,784 + +0.8
989,784 + -0.1
989,784 + -1.2
989,784 + -1.1
989,784 + -0.2
989,785 - -0.4
989,797 + +1.3
989,797 + +0.7
989,797 + +1.2
989,797 + +0.3
989,797 + +0.0
989,798 - +1.3
989,798 - -1.2
989,798 - -0.3
989,811 + -0.2
990,039 + AO356_04350 0.29 -1.1
990,138 - AO356_04350 0.42 -1.5
990,225 + AO356_04350 0.53 -0.3
990,355 + AO356_04350 0.70 +0.3
990,366 - AO356_04350 0.72 +0.0
990,465 + AO356_04350 0.84 +0.0
990,465 + AO356_04350 0.84 -0.9
990,465 + AO356_04350 0.84 -0.6
990,465 + AO356_04350 0.84 -0.4
990,465 + AO356_04350 0.84 +0.4
990,465 + AO356_04350 0.84 +1.4
990,465 + AO356_04350 0.84 -0.6
990,465 + AO356_04350 0.84 +0.5
990,465 + AO356_04350 0.84 -0.1
990,466 - AO356_04350 0.84 -0.0
990,466 - AO356_04350 0.84 +0.8
990,466 - AO356_04350 0.84 -1.5
990,466 - AO356_04350 0.84 +0.5
990,466 - AO356_04350 0.84 -0.2
990,575 + -0.5
990,576 - -1.1
990,620 + -0.5
990,620 + -1.3
990,620 + +0.8
990,621 - +0.1
990,621 - +1.3

Or see this region's nucleotide sequence