Experiment: MoYLS4 with Neomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2954 and DvMF_2955 overlap by 4 nucleotides DvMF_2955 and DvMF_2956 are separated by 13 nucleotides
DvMF_2954: DvMF_2954 - protein of unknown function DUF214 (RefSeq), at 3,726,358 to 3,727,689
_2954
DvMF_2955: DvMF_2955 - ABC transporter related (RefSeq), at 3,727,686 to 3,728,438
_2955
DvMF_2956: DvMF_2956 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,728,452 to 3,729,744
_2956
Position (kb)
3727
3728
3729 Strain fitness (log2 ratio)
-1
0
1 at 3726.736 kb on - strand, within DvMF_2954 at 3726.850 kb on + strand, within DvMF_2954 at 3727.100 kb on + strand, within DvMF_2954 at 3727.266 kb on - strand, within DvMF_2954 at 3727.341 kb on + strand, within DvMF_2954 at 3727.341 kb on + strand, within DvMF_2954 at 3727.341 kb on + strand, within DvMF_2954 at 3727.341 kb on + strand, within DvMF_2954 at 3727.341 kb on + strand, within DvMF_2954 at 3727.347 kb on + strand, within DvMF_2954 at 3727.349 kb on - strand, within DvMF_2954 at 3727.562 kb on - strand at 3727.594 kb on + strand at 3727.940 kb on - strand, within DvMF_2955 at 3727.975 kb on - strand, within DvMF_2955 at 3728.153 kb on + strand, within DvMF_2955 at 3728.234 kb on - strand, within DvMF_2955 at 3728.639 kb on - strand, within DvMF_2956 at 3728.801 kb on - strand, within DvMF_2956 at 3728.811 kb on - strand, within DvMF_2956 at 3728.967 kb on - strand, within DvMF_2956 at 3729.001 kb on - strand, within DvMF_2956 at 3729.003 kb on - strand, within DvMF_2956 at 3729.017 kb on - strand, within DvMF_2956 at 3729.190 kb on + strand, within DvMF_2956 at 3729.260 kb on + strand, within DvMF_2956 at 3729.318 kb on - strand, within DvMF_2956 at 3729.390 kb on - strand, within DvMF_2956 at 3729.416 kb on + strand, within DvMF_2956 at 3729.424 kb on - strand, within DvMF_2956
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.06 mg/ml remove 3,726,736 - DvMF_2954 0.28 -1.2 3,726,850 + DvMF_2954 0.37 -0.7 3,727,100 + DvMF_2954 0.56 -0.6 3,727,266 - DvMF_2954 0.68 -0.4 3,727,341 + DvMF_2954 0.74 -0.5 3,727,341 + DvMF_2954 0.74 -0.5 3,727,341 + DvMF_2954 0.74 -0.1 3,727,341 + DvMF_2954 0.74 -0.5 3,727,341 + DvMF_2954 0.74 -0.8 3,727,347 + DvMF_2954 0.74 -0.9 3,727,349 - DvMF_2954 0.74 -1.7 3,727,562 - -0.4 3,727,594 + -0.4 3,727,940 - DvMF_2955 0.34 -0.5 3,727,975 - DvMF_2955 0.38 -0.4 3,728,153 + DvMF_2955 0.62 -0.3 3,728,234 - DvMF_2955 0.73 -0.8 3,728,639 - DvMF_2956 0.14 -0.6 3,728,801 - DvMF_2956 0.27 -0.3 3,728,811 - DvMF_2956 0.28 -0.3 3,728,967 - DvMF_2956 0.40 -0.5 3,729,001 - DvMF_2956 0.42 -0.3 3,729,003 - DvMF_2956 0.43 -0.1 3,729,017 - DvMF_2956 0.44 -0.3 3,729,190 + DvMF_2956 0.57 -1.3 3,729,260 + DvMF_2956 0.62 -0.8 3,729,318 - DvMF_2956 0.67 -0.4 3,729,390 - DvMF_2956 0.73 -0.0 3,729,416 + DvMF_2956 0.75 -0.9 3,729,424 - DvMF_2956 0.75 -1.1
Or see this region's nucleotide sequence