Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2787

Experiment: MoYLS4 with Neomycin 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2786 and DvMF_2787 are separated by 191 nucleotidesDvMF_2787 and DvMF_2788 are separated by 151 nucleotides DvMF_2786: DvMF_2786 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,527,193 to 3,528,983 _2786 DvMF_2787: DvMF_2787 - extracellular solute-binding protein family 3 (RefSeq), at 3,529,175 to 3,530,002 _2787 DvMF_2788: DvMF_2788 - ABC transporter related (RefSeq), at 3,530,154 to 3,530,885 _2788 Position (kb) 3529 3530 3531Strain fitness (log2 ratio) -1 0 1at 3528.203 kb on + strand, within DvMF_2786at 3528.243 kb on + strand, within DvMF_2786at 3528.345 kb on - strand, within DvMF_2786at 3528.424 kb on + strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.726 kb on - strand, within DvMF_2786at 3528.841 kb on + strandat 3528.989 kb on + strandat 3529.055 kb on - strandat 3529.078 kb on + strandat 3529.080 kb on + strandat 3529.735 kb on + strand, within DvMF_2787at 3529.942 kb on - strandat 3530.227 kb on - strandat 3530.319 kb on + strand, within DvMF_2788at 3530.321 kb on - strand, within DvMF_2788at 3530.327 kb on - strand, within DvMF_2788at 3530.358 kb on - strand, within DvMF_2788at 3530.797 kb on + strand, within DvMF_2788at 3530.859 kb on - strandat 3530.867 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.06 mg/ml
remove
3,528,203 + DvMF_2786 0.56 -0.3
3,528,243 + DvMF_2786 0.59 -0.6
3,528,345 - DvMF_2786 0.64 -0.6
3,528,424 + DvMF_2786 0.69 +0.4
3,528,460 - DvMF_2786 0.71 -0.1
3,528,460 - DvMF_2786 0.71 -1.3
3,528,460 - DvMF_2786 0.71 +0.1
3,528,460 - DvMF_2786 0.71 -0.4
3,528,726 - DvMF_2786 0.86 -1.0
3,528,841 + -0.4
3,528,989 + -0.5
3,529,055 - +0.0
3,529,078 + -0.2
3,529,080 + -0.4
3,529,735 + DvMF_2787 0.68 -1.0
3,529,942 - +0.4
3,530,227 - -0.5
3,530,319 + DvMF_2788 0.23 -0.9
3,530,321 - DvMF_2788 0.23 -0.7
3,530,327 - DvMF_2788 0.24 -0.4
3,530,358 - DvMF_2788 0.28 -0.4
3,530,797 + DvMF_2788 0.88 -0.5
3,530,859 - -1.0
3,530,867 - -0.5

Or see this region's nucleotide sequence