Experiment: MoYLS4 with Neomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2786 and DvMF_2787 are separated by 191 nucleotides DvMF_2787 and DvMF_2788 are separated by 151 nucleotides
DvMF_2786: DvMF_2786 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,527,193 to 3,528,983
_2786
DvMF_2787: DvMF_2787 - extracellular solute-binding protein family 3 (RefSeq), at 3,529,175 to 3,530,002
_2787
DvMF_2788: DvMF_2788 - ABC transporter related (RefSeq), at 3,530,154 to 3,530,885
_2788
Position (kb)
3529
3530
3531 Strain fitness (log2 ratio)
-1
0
1 at 3528.203 kb on + strand, within DvMF_2786 at 3528.243 kb on + strand, within DvMF_2786 at 3528.345 kb on - strand, within DvMF_2786 at 3528.424 kb on + strand, within DvMF_2786 at 3528.460 kb on - strand, within DvMF_2786 at 3528.460 kb on - strand, within DvMF_2786 at 3528.460 kb on - strand, within DvMF_2786 at 3528.460 kb on - strand, within DvMF_2786 at 3528.726 kb on - strand, within DvMF_2786 at 3528.841 kb on + strand at 3528.989 kb on + strand at 3529.055 kb on - strand at 3529.078 kb on + strand at 3529.080 kb on + strand at 3529.735 kb on + strand, within DvMF_2787 at 3529.942 kb on - strand at 3530.227 kb on - strand at 3530.319 kb on + strand, within DvMF_2788 at 3530.321 kb on - strand, within DvMF_2788 at 3530.327 kb on - strand, within DvMF_2788 at 3530.358 kb on - strand, within DvMF_2788 at 3530.797 kb on + strand, within DvMF_2788 at 3530.859 kb on - strand at 3530.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.06 mg/ml remove 3,528,203 + DvMF_2786 0.56 -0.3 3,528,243 + DvMF_2786 0.59 -0.6 3,528,345 - DvMF_2786 0.64 -0.6 3,528,424 + DvMF_2786 0.69 +0.4 3,528,460 - DvMF_2786 0.71 -0.1 3,528,460 - DvMF_2786 0.71 -1.3 3,528,460 - DvMF_2786 0.71 +0.1 3,528,460 - DvMF_2786 0.71 -0.4 3,528,726 - DvMF_2786 0.86 -1.0 3,528,841 + -0.4 3,528,989 + -0.5 3,529,055 - +0.0 3,529,078 + -0.2 3,529,080 + -0.4 3,529,735 + DvMF_2787 0.68 -1.0 3,529,942 - +0.4 3,530,227 - -0.5 3,530,319 + DvMF_2788 0.23 -0.9 3,530,321 - DvMF_2788 0.23 -0.7 3,530,327 - DvMF_2788 0.24 -0.4 3,530,358 - DvMF_2788 0.28 -0.4 3,530,797 + DvMF_2788 0.88 -0.5 3,530,859 - -1.0 3,530,867 - -0.5
Or see this region's nucleotide sequence