Experiment: MoYLS4 with Neomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2387 and DvMF_2388 overlap by 37 nucleotides DvMF_2388 and DvMF_2389 are separated by 362 nucleotides
DvMF_2387: DvMF_2387 - glutamate synthase (NADPH) (RefSeq), at 3,016,863 to 3,017,990
_2387
DvMF_2388: DvMF_2388 - ferredoxin-dependent glutamate synthase (RefSeq), at 3,017,954 to 3,019,588
_2388
DvMF_2389: DvMF_2389 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,019,951 to 3,022,284
_2389
Position (kb)
3017
3018
3019
3020 Strain fitness (log2 ratio)
-1
0
1 at 3017.085 kb on - strand, within DvMF_2387 at 3017.299 kb on + strand, within DvMF_2387 at 3017.335 kb on + strand, within DvMF_2387 at 3017.638 kb on - strand, within DvMF_2387 at 3017.839 kb on + strand, within DvMF_2387 at 3017.894 kb on + strand at 3017.927 kb on - strand at 3017.979 kb on + strand at 3018.033 kb on + strand at 3018.052 kb on + strand at 3018.097 kb on - strand at 3018.118 kb on - strand, within DvMF_2388 at 3018.234 kb on - strand, within DvMF_2388 at 3018.358 kb on + strand, within DvMF_2388 at 3018.442 kb on - strand, within DvMF_2388 at 3018.598 kb on - strand, within DvMF_2388 at 3018.610 kb on + strand, within DvMF_2388 at 3018.886 kb on - strand, within DvMF_2388 at 3019.218 kb on - strand, within DvMF_2388 at 3019.233 kb on - strand, within DvMF_2388 at 3019.311 kb on - strand, within DvMF_2388 at 3019.495 kb on - strand at 3019.497 kb on + strand at 3020.083 kb on + strand at 3020.093 kb on - strand at 3020.158 kb on - strand at 3020.227 kb on + strand, within DvMF_2389 at 3020.257 kb on + strand, within DvMF_2389 at 3020.296 kb on + strand, within DvMF_2389 at 3020.296 kb on + strand, within DvMF_2389 at 3020.304 kb on - strand, within DvMF_2389 at 3020.448 kb on - strand, within DvMF_2389 at 3020.568 kb on + strand, within DvMF_2389
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.06 mg/ml remove 3,017,085 - DvMF_2387 0.20 -1.2 3,017,299 + DvMF_2387 0.39 -0.6 3,017,335 + DvMF_2387 0.42 -0.7 3,017,638 - DvMF_2387 0.69 -0.3 3,017,839 + DvMF_2387 0.87 +0.1 3,017,894 + +0.1 3,017,927 - -1.2 3,017,979 + +0.1 3,018,033 + -0.3 3,018,052 + -1.2 3,018,097 - -0.7 3,018,118 - DvMF_2388 0.10 -0.3 3,018,234 - DvMF_2388 0.17 +0.1 3,018,358 + DvMF_2388 0.25 +0.0 3,018,442 - DvMF_2388 0.30 -0.5 3,018,598 - DvMF_2388 0.39 -0.2 3,018,610 + DvMF_2388 0.40 -0.4 3,018,886 - DvMF_2388 0.57 +1.0 3,019,218 - DvMF_2388 0.77 -0.6 3,019,233 - DvMF_2388 0.78 -0.5 3,019,311 - DvMF_2388 0.83 -0.4 3,019,495 - -0.3 3,019,497 + -1.2 3,020,083 + -0.4 3,020,093 - -0.6 3,020,158 - -0.2 3,020,227 + DvMF_2389 0.12 +0.3 3,020,257 + DvMF_2389 0.13 -0.0 3,020,296 + DvMF_2389 0.15 +0.1 3,020,296 + DvMF_2389 0.15 +0.4 3,020,304 - DvMF_2389 0.15 -0.9 3,020,448 - DvMF_2389 0.21 +0.3 3,020,568 + DvMF_2389 0.26 -0.8
Or see this region's nucleotide sequence