Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1531

Experiment: MoYLS4 with Neomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1530 and DvMF_1531 are separated by 422 nucleotidesDvMF_1531 and DvMF_1532 are separated by 221 nucleotides DvMF_1530: DvMF_1530 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,885,562 to 1,888,252 _1530 DvMF_1531: DvMF_1531 - hypothetical protein (RefSeq), at 1,888,675 to 1,888,866 _1531 DvMF_1532: DvMF_1532 - carboxynorspermidine decarboxylase (RefSeq), at 1,889,088 to 1,890,305 _1532 Position (kb) 1888 1889Strain fitness (log2 ratio) -1 0 1at 1887.743 kb on + strand, within DvMF_1530at 1887.953 kb on + strand, within DvMF_1530at 1888.073 kb on - strandat 1888.332 kb on - strandat 1888.446 kb on - strandat 1888.478 kb on + strandat 1888.500 kb on - strandat 1888.500 kb on - strandat 1888.638 kb on - strandat 1888.680 kb on - strandat 1888.754 kb on - strand, within DvMF_1531at 1889.009 kb on + strandat 1889.041 kb on - strandat 1889.079 kb on - strandat 1889.374 kb on - strand, within DvMF_1532at 1889.482 kb on + strand, within DvMF_1532at 1889.482 kb on + strand, within DvMF_1532at 1889.507 kb on + strand, within DvMF_1532at 1889.533 kb on - strand, within DvMF_1532at 1889.558 kb on - strand, within DvMF_1532at 1889.723 kb on - strand, within DvMF_1532at 1889.863 kb on + strand, within DvMF_1532

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.06 mg/ml
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1,887,743 + DvMF_1530 0.81 -0.2
1,887,953 + DvMF_1530 0.89 +0.3
1,888,073 - -1.0
1,888,332 - -0.6
1,888,446 - -0.1
1,888,478 + -0.6
1,888,500 - -0.1
1,888,500 - -0.4
1,888,638 - -0.4
1,888,680 - -0.2
1,888,754 - DvMF_1531 0.41 -0.0
1,889,009 + +0.5
1,889,041 - +0.1
1,889,079 - -0.7
1,889,374 - DvMF_1532 0.23 +1.3
1,889,482 + DvMF_1532 0.32 -1.5
1,889,482 + DvMF_1532 0.32 -0.6
1,889,507 + DvMF_1532 0.34 -1.0
1,889,533 - DvMF_1532 0.37 -0.4
1,889,558 - DvMF_1532 0.39 +0.2
1,889,723 - DvMF_1532 0.52 -0.9
1,889,863 + DvMF_1532 0.64 -0.8

Or see this region's nucleotide sequence