Strain Fitness in Shewanella loihica PV-4 around Shew_R0103

Experiment: Choline chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_R0102 and Shew_R0103 are separated by 168 nucleotidesShew_R0103 and Shew_R0104 are separated by 240 nucleotides Shew_R0102: Shew_R0102 - 5S ribosomal RNA (RefSeq), at 3,484,324 to 3,484,444 _R0102 Shew_R0103: Shew_R0103 - 23S ribosomal RNA (RefSeq), at 3,484,613 to 3,487,505 _R0103 Shew_R0104: Shew_R0104 - 16S ribosomal RNA (RefSeq), at 3,487,746 to 3,489,302 _R0104 Position (kb) 3484 3485 3486 3487 3488Strain fitness (log2 ratio) -1 0 1at 3483.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 200 mM
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3,483,797 - +0.8

Or see this region's nucleotide sequence