Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrmA and Shew_1614 are separated by 302 nucleotides Shew_1614 and Shew_1615 are separated by 478 nucleotides Shew_1615 and Shew_1616 overlap by 4 nucleotides Shew_1616 and Shew_1617 are separated by 56 nucleotides
Shew_1613: rrmA - 23S rRNA methyltransferase A (RefSeq), at 1,845,113 to 1,845,925
rrmA
Shew_1614: Shew_1614 - cold-shock DNA-binding domain-containing protein (RefSeq), at 1,846,228 to 1,846,434
_1614
Shew_1615: Shew_1615 - ABC transporter-related protein (RefSeq), at 1,846,913 to 1,847,818
_1615
Shew_1616: Shew_1616 - hypothetical protein (RefSeq), at 1,847,815 to 1,848,669
_1616
Shew_1617: Shew_1617 - hypothetical protein (RefSeq), at 1,848,726 to 1,849,373
_1617
Position (kb) 1846
1847
1848 Strain fitness (log2 ratio) -1
0
1 at 1846.816 kb on + strand at 1846.944 kb on - strand at 1847.380 kb on - strand, within Shew_1615 at 1847.562 kb on - strand, within Shew_1615 at 1847.892 kb on + strand at 1848.020 kb on + strand, within Shew_1616 at 1848.035 kb on + strand, within Shew_1616 at 1848.615 kb on - strand at 1848.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 1,846,816 + -0.3 1,846,944 - +0.2 1,847,380 - Shew_1615 0.52 -0.5 1,847,562 - Shew_1615 0.72 -0.4 1,847,892 + -0.4 1,848,020 + Shew_1616 0.24 -0.8 1,848,035 + Shew_1616 0.26 -0.5 1,848,615 - +0.1 1,848,644 - -0.3
Or see this region's nucleotide sequence