Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1606 and Shew_1607 are separated by 77 nucleotides Shew_1607 and Shew_1608 are separated by 23 nucleotides Shew_1608 and Shew_1609 are separated by 23 nucleotides Shew_1609 and Shew_1610 are separated by 93 nucleotides
Shew_1606: Shew_1606 - hypothetical protein (RefSeq), at 1,838,176 to 1,838,508
_1606
Shew_1607: Shew_1607 - thioesterase superfamily protein (RefSeq), at 1,838,586 to 1,839,074
_1607
Shew_1608: Shew_1608 - carbohydrate kinase, FGGY (RefSeq), at 1,839,098 to 1,840,681
_1608
Shew_1609: Shew_1609 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 1,840,705 to 1,841,580
_1609
Shew_1610: Shew_1610 - cytidine deaminase (RefSeq), at 1,841,674 to 1,842,564
_1610
Position (kb) 1839
1840
1841 Strain fitness (log2 ratio) -1
0
1
2
3 at 1838.259 kb on - strand, within Shew_1606 at 1838.667 kb on + strand, within Shew_1607 at 1838.706 kb on + strand, within Shew_1607 at 1839.163 kb on + strand at 1839.388 kb on + strand, within Shew_1608 at 1839.781 kb on - strand, within Shew_1608 at 1839.955 kb on + strand, within Shew_1608 at 1839.991 kb on - strand, within Shew_1608 at 1840.320 kb on + strand, within Shew_1608 at 1840.490 kb on + strand, within Shew_1608 at 1840.552 kb on - strand at 1840.621 kb on + strand at 1840.675 kb on + strand at 1840.675 kb on + strand at 1840.775 kb on + strand at 1840.789 kb on + strand at 1840.789 kb on + strand at 1840.806 kb on + strand, within Shew_1609 at 1841.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 1,838,259 - Shew_1606 0.25 -1.6 1,838,667 + Shew_1607 0.17 +0.0 1,838,706 + Shew_1607 0.25 +0.8 1,839,163 + -0.6 1,839,388 + Shew_1608 0.18 +0.0 1,839,781 - Shew_1608 0.43 +3.1 1,839,955 + Shew_1608 0.54 +0.6 1,839,991 - Shew_1608 0.56 +1.3 1,840,320 + Shew_1608 0.77 -0.5 1,840,490 + Shew_1608 0.88 +0.8 1,840,552 - -0.2 1,840,621 + -0.3 1,840,675 + -0.4 1,840,675 + -1.0 1,840,775 + +0.1 1,840,789 + -0.7 1,840,789 + -0.3 1,840,806 + Shew_1609 0.12 -0.1 1,841,529 + -0.1
Or see this region's nucleotide sequence