Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0326 and Shew_0327 are separated by 101 nucleotides Shew_0327 and Shew_0328 are separated by 112 nucleotides Shew_0328 and Shew_0329 are separated by 262 nucleotides Shew_0329 and Shew_0330 are separated by 17 nucleotides
Shew_0326: Shew_0326 - HAD family hydrolase (RefSeq), at 371,917 to 372,639
_0326
Shew_0327: Shew_0327 - HupE/UreJ protein (RefSeq), at 372,741 to 373,316
_0327
Shew_0328: Shew_0328 - hypothetical protein (RefSeq), at 373,429 to 374,145
_0328
Shew_0329: Shew_0329 - Fis family transcriptional regulator (RefSeq), at 374,408 to 374,713
_0329
Shew_0330: Shew_0330 - nifR3 family TIM-barrel protein (RefSeq), at 374,731 to 375,699
_0330
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.474 kb on - strand, within Shew_0326 at 372.750 kb on + strand at 373.140 kb on + strand, within Shew_0327 at 373.145 kb on + strand, within Shew_0327 at 373.148 kb on - strand, within Shew_0327 at 373.554 kb on + strand, within Shew_0328 at 373.647 kb on - strand, within Shew_0328 at 374.191 kb on + strand at 374.191 kb on + strand at 374.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 372,474 - Shew_0326 0.77 +0.7 372,750 + -0.1 373,140 + Shew_0327 0.69 +1.0 373,145 + Shew_0327 0.70 +0.3 373,148 - Shew_0327 0.71 +0.1 373,554 + Shew_0328 0.17 -0.6 373,647 - Shew_0328 0.30 -0.1 374,191 + +0.3 374,191 + -0.6 374,199 - +0.2
Or see this region's nucleotide sequence