Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1852

Experiment: MoLS4 without vitamins with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1851 and DVU1852 are separated by 154 nucleotidesDVU1852 and DVU1853 are separated by 181 nucleotidesDVU1853 and DVU1854 are separated by 76 nucleotides DVU1851: DVU1851 - peptidase, M23/M37 family (TIGR), at 1,918,806 to 1,920,128 DVU1851 DVU1852: DVU1852 - conserved hypothetical protein (TIGR), at 1,920,283 to 1,920,894 DVU1852 DVU1853: DVU1853 - hypothetical protein (TIGR), at 1,921,076 to 1,921,372 DVU1853 DVU1854: DVU1854 - hypothetical protein (TIGR), at 1,921,449 to 1,922,141 DVU1854 Position (kb) 1920 1921Strain fitness (log2 ratio) -2 -1 0 1at 1919.403 kb on + strand, within DVU1851at 1919.423 kb on + strand, within DVU1851at 1919.462 kb on - strand, within DVU1851at 1919.593 kb on + strand, within DVU1851at 1919.639 kb on + strand, within DVU1851at 1919.729 kb on - strand, within DVU1851at 1919.752 kb on - strand, within DVU1851at 1919.752 kb on - strand, within DVU1851at 1919.910 kb on - strand, within DVU1851at 1919.940 kb on - strand, within DVU1851at 1920.043 kb on - strandat 1920.635 kb on - strand, within DVU1852at 1920.636 kb on - strand, within DVU1852at 1920.637 kb on + strand, within DVU1852at 1920.647 kb on - strand, within DVU1852at 1920.652 kb on - strand, within DVU1852at 1920.855 kb on + strandat 1920.863 kb on - strandat 1920.934 kb on - strandat 1920.982 kb on + strandat 1921.179 kb on - strand, within DVU1853at 1921.247 kb on + strand, within DVU1853at 1921.368 kb on - strandat 1921.576 kb on + strand, within DVU1854at 1921.639 kb on - strand, within DVU1854at 1921.707 kb on - strand, within DVU1854at 1921.825 kb on - strand, within DVU1854at 1921.831 kb on + strand, within DVU1854

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2%
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1,919,403 + DVU1851 0.45 +0.2
1,919,423 + DVU1851 0.47 -2.1
1,919,462 - DVU1851 0.50 -0.0
1,919,593 + DVU1851 0.59 -0.8
1,919,639 + DVU1851 0.63 -0.2
1,919,729 - DVU1851 0.70 +0.9
1,919,752 - DVU1851 0.72 -0.9
1,919,752 - DVU1851 0.72 -0.2
1,919,910 - DVU1851 0.83 -0.3
1,919,940 - DVU1851 0.86 +0.1
1,920,043 - -0.4
1,920,635 - DVU1852 0.58 -0.0
1,920,636 - DVU1852 0.58 -0.8
1,920,637 + DVU1852 0.58 -0.2
1,920,647 - DVU1852 0.59 -2.2
1,920,652 - DVU1852 0.60 -1.0
1,920,855 + -0.1
1,920,863 - +0.8
1,920,934 - -0.8
1,920,982 + -0.4
1,921,179 - DVU1853 0.35 -0.7
1,921,247 + DVU1853 0.58 -1.7
1,921,368 - -0.2
1,921,576 + DVU1854 0.18 -1.3
1,921,639 - DVU1854 0.27 -0.5
1,921,707 - DVU1854 0.37 -0.0
1,921,825 - DVU1854 0.54 -2.1
1,921,831 + DVU1854 0.55 -0.2

Or see this region's nucleotide sequence