Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0828 and Dshi_0829 overlap by 4 nucleotides Dshi_0829 and Dshi_0830 overlap by 4 nucleotides Dshi_0830 and Dshi_0831 overlap by 4 nucleotides
Dshi_0828: Dshi_0828 - pyrimidine-nucleoside phosphorylase (RefSeq), at 835,752 to 837,059
_0828
Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) <small>(from data)</small>, at 837,056 to 838,255
_0829
Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) <small>(from data)</small>, at 838,252 to 839,247
_0830
Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876
_0831
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1 at 836.098 kb on - strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.330 kb on - strand, within Dshi_0828 at 836.364 kb on - strand, within Dshi_0828 at 836.474 kb on - strand, within Dshi_0828 at 836.621 kb on + strand, within Dshi_0828 at 836.852 kb on + strand, within Dshi_0828 at 836.942 kb on + strand at 836.970 kb on - strand at 837.156 kb on - strand at 837.166 kb on - strand at 837.405 kb on + strand, within Dshi_0829 at 837.490 kb on - strand, within Dshi_0829 at 837.572 kb on + strand, within Dshi_0829 at 837.778 kb on + strand, within Dshi_0829 at 837.892 kb on + strand, within Dshi_0829 at 837.923 kb on + strand, within Dshi_0829 at 838.001 kb on + strand, within Dshi_0829 at 838.022 kb on - strand, within Dshi_0829 at 838.104 kb on + strand, within Dshi_0829 at 838.104 kb on + strand, within Dshi_0829 at 838.112 kb on - strand, within Dshi_0829 at 838.435 kb on - strand, within Dshi_0830 at 838.516 kb on - strand, within Dshi_0830 at 838.636 kb on + strand, within Dshi_0830 at 838.733 kb on - strand, within Dshi_0830 at 838.746 kb on + strand, within Dshi_0830 at 839.002 kb on - strand, within Dshi_0830 at 839.154 kb on + strand at 839.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 836,098 - Dshi_0828 0.26 +0.4 836,237 + Dshi_0828 0.37 -0.6 836,237 + Dshi_0828 0.37 +0.4 836,330 - Dshi_0828 0.44 -0.4 836,364 - Dshi_0828 0.47 +0.2 836,474 - Dshi_0828 0.55 -0.1 836,621 + Dshi_0828 0.66 +0.9 836,852 + Dshi_0828 0.84 +1.0 836,942 + -0.3 836,970 - +0.2 837,156 - -0.2 837,166 - +0.1 837,405 + Dshi_0829 0.29 +0.4 837,490 - Dshi_0829 0.36 -0.4 837,572 + Dshi_0829 0.43 -0.2 837,778 + Dshi_0829 0.60 +0.7 837,892 + Dshi_0829 0.70 +1.2 837,923 + Dshi_0829 0.72 -0.0 838,001 + Dshi_0829 0.79 -0.0 838,022 - Dshi_0829 0.81 +0.6 838,104 + Dshi_0829 0.87 -0.0 838,104 + Dshi_0829 0.87 +0.3 838,112 - Dshi_0829 0.88 +1.1 838,435 - Dshi_0830 0.18 +0.1 838,516 - Dshi_0830 0.27 +0.9 838,636 + Dshi_0830 0.39 -0.3 838,733 - Dshi_0830 0.48 +1.0 838,746 + Dshi_0830 0.50 +1.6 839,002 - Dshi_0830 0.75 +0.2 839,154 + +0.0 839,247 + -0.3
Or see this region's nucleotide sequence