Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0826 and Dshi_0827 are separated by 173 nucleotides Dshi_0827 and Dshi_0828 overlap by 4 nucleotides Dshi_0828 and Dshi_0829 overlap by 4 nucleotides
Dshi_0826: Dshi_0826 - malic protein NAD-binding (RefSeq), at 832,910 to 835,189
_0826
Dshi_0827: Dshi_0827 - cytidine deaminase (RefSeq), at 835,363 to 835,755
_0827
Dshi_0828: Dshi_0828 - pyrimidine-nucleoside phosphorylase (RefSeq), at 835,752 to 837,059
_0828
Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) <small>(from data)</small>, at 837,056 to 838,255
_0829
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.767 kb on - strand, within Dshi_0826 at 834.817 kb on - strand, within Dshi_0826 at 834.817 kb on - strand, within Dshi_0826 at 834.889 kb on + strand, within Dshi_0826 at 834.902 kb on - strand, within Dshi_0826 at 834.921 kb on - strand, within Dshi_0826 at 834.999 kb on - strand at 835.111 kb on + strand at 835.111 kb on + strand at 835.344 kb on - strand at 835.379 kb on - strand at 835.418 kb on - strand, within Dshi_0827 at 835.459 kb on - strand, within Dshi_0827 at 835.469 kb on - strand, within Dshi_0827 at 835.597 kb on - strand, within Dshi_0827 at 835.622 kb on + strand, within Dshi_0827 at 836.098 kb on - strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.237 kb on + strand, within Dshi_0828 at 836.330 kb on - strand, within Dshi_0828 at 836.364 kb on - strand, within Dshi_0828 at 836.474 kb on - strand, within Dshi_0828 at 836.621 kb on + strand, within Dshi_0828 at 836.852 kb on + strand, within Dshi_0828 at 836.942 kb on + strand at 836.970 kb on - strand at 837.156 kb on - strand at 837.166 kb on - strand at 837.405 kb on + strand, within Dshi_0829 at 837.490 kb on - strand, within Dshi_0829 at 837.572 kb on + strand, within Dshi_0829 at 837.778 kb on + strand, within Dshi_0829 at 837.892 kb on + strand, within Dshi_0829 at 837.923 kb on + strand, within Dshi_0829 at 838.001 kb on + strand, within Dshi_0829 at 838.022 kb on - strand, within Dshi_0829
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 834,767 - Dshi_0826 0.81 -1.3 834,817 - Dshi_0826 0.84 -3.0 834,817 - Dshi_0826 0.84 +0.2 834,889 + Dshi_0826 0.87 -2.5 834,902 - Dshi_0826 0.87 -1.6 834,921 - Dshi_0826 0.88 -1.9 834,999 - -1.8 835,111 + -1.4 835,111 + -1.8 835,344 - +0.4 835,379 - +0.2 835,418 - Dshi_0827 0.14 -0.8 835,459 - Dshi_0827 0.24 -0.5 835,469 - Dshi_0827 0.27 +0.6 835,597 - Dshi_0827 0.60 -0.2 835,622 + Dshi_0827 0.66 +0.7 836,098 - Dshi_0828 0.26 +0.4 836,237 + Dshi_0828 0.37 -0.6 836,237 + Dshi_0828 0.37 +0.4 836,330 - Dshi_0828 0.44 -0.4 836,364 - Dshi_0828 0.47 +0.2 836,474 - Dshi_0828 0.55 -0.1 836,621 + Dshi_0828 0.66 +0.9 836,852 + Dshi_0828 0.84 +1.0 836,942 + -0.3 836,970 - +0.2 837,156 - -0.2 837,166 - +0.1 837,405 + Dshi_0829 0.29 +0.4 837,490 - Dshi_0829 0.36 -0.4 837,572 + Dshi_0829 0.43 -0.2 837,778 + Dshi_0829 0.60 +0.7 837,892 + Dshi_0829 0.70 +1.2 837,923 + Dshi_0829 0.72 -0.0 838,001 + Dshi_0829 0.79 -0.0 838,022 - Dshi_0829 0.81 +0.6
Or see this region's nucleotide sequence