Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0188 and Dshi_0189 are separated by 153 nucleotides Dshi_0189 and Dshi_0190 are separated by 3 nucleotides Dshi_0190 and Dshi_0191 are separated by 10 nucleotides
Dshi_0188: Dshi_0188 - hydroxymethylbutenyl pyrophosphate reductase (RefSeq), at 189,644 to 190,600
_0188
Dshi_0189: Dshi_0189 - cytochrome c class I (RefSeq), at 190,754 to 191,188
_0189
Dshi_0190: Dshi_0190 - membrane protein-like protein (RefSeq), at 191,192 to 191,707
_0190
Dshi_0191: Dshi_0191 - protein of unknown function DUF88 (RefSeq), at 191,718 to 192,290
_0191
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.727 kb on + strand at 190.728 kb on - strand at 190.738 kb on + strand at 190.786 kb on + strand at 190.792 kb on + strand at 190.822 kb on + strand, within Dshi_0189 at 190.862 kb on + strand, within Dshi_0189 at 190.869 kb on - strand, within Dshi_0189 at 190.891 kb on - strand, within Dshi_0189 at 190.893 kb on + strand, within Dshi_0189 at 190.901 kb on - strand, within Dshi_0189 at 191.061 kb on - strand, within Dshi_0189 at 191.130 kb on - strand, within Dshi_0189 at 191.146 kb on + strand at 191.156 kb on + strand at 191.175 kb on - strand at 191.214 kb on + strand at 191.221 kb on - strand at 191.222 kb on - strand at 191.327 kb on + strand, within Dshi_0190 at 191.327 kb on + strand, within Dshi_0190 at 191.327 kb on + strand, within Dshi_0190 at 191.335 kb on - strand, within Dshi_0190 at 191.342 kb on + strand, within Dshi_0190 at 191.389 kb on - strand, within Dshi_0190 at 191.431 kb on - strand, within Dshi_0190 at 191.460 kb on + strand, within Dshi_0190 at 191.465 kb on + strand, within Dshi_0190 at 191.465 kb on + strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.473 kb on - strand, within Dshi_0190 at 191.532 kb on + strand, within Dshi_0190 at 191.539 kb on + strand, within Dshi_0190 at 191.547 kb on - strand, within Dshi_0190 at 191.609 kb on - strand, within Dshi_0190 at 191.611 kb on - strand, within Dshi_0190 at 191.634 kb on + strand, within Dshi_0190 at 191.642 kb on - strand, within Dshi_0190 at 191.849 kb on + strand, within Dshi_0191 at 191.866 kb on + strand, within Dshi_0191 at 191.869 kb on - strand, within Dshi_0191 at 191.888 kb on - strand, within Dshi_0191 at 191.901 kb on - strand, within Dshi_0191 at 191.908 kb on - strand, within Dshi_0191 at 191.950 kb on + strand, within Dshi_0191 at 191.958 kb on + strand, within Dshi_0191 at 191.998 kb on + strand, within Dshi_0191 at 192.010 kb on + strand, within Dshi_0191 at 192.018 kb on - strand, within Dshi_0191 at 192.018 kb on - strand, within Dshi_0191 at 192.029 kb on - strand, within Dshi_0191 at 192.035 kb on - strand, within Dshi_0191 at 192.039 kb on + strand, within Dshi_0191 at 192.040 kb on + strand, within Dshi_0191 at 192.044 kb on + strand, within Dshi_0191 at 192.093 kb on + strand, within Dshi_0191 at 192.117 kb on + strand, within Dshi_0191 at 192.140 kb on + strand, within Dshi_0191 at 192.142 kb on + strand, within Dshi_0191 at 192.185 kb on - strand, within Dshi_0191
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 190,727 + +0.9 190,728 - +0.0 190,738 + -0.7 190,786 + +1.6 190,792 + +0.1 190,822 + Dshi_0189 0.16 -1.3 190,862 + Dshi_0189 0.25 +0.3 190,869 - Dshi_0189 0.26 -0.6 190,891 - Dshi_0189 0.31 -0.4 190,893 + Dshi_0189 0.32 -0.2 190,901 - Dshi_0189 0.34 +0.1 191,061 - Dshi_0189 0.71 +1.4 191,130 - Dshi_0189 0.86 +0.6 191,146 + +0.1 191,156 + -0.1 191,175 - +1.4 191,214 + +0.6 191,221 - +0.4 191,222 - -0.0 191,327 + Dshi_0190 0.26 -0.8 191,327 + Dshi_0190 0.26 -0.1 191,327 + Dshi_0190 0.26 -0.3 191,335 - Dshi_0190 0.28 +0.6 191,342 + Dshi_0190 0.29 +1.4 191,389 - Dshi_0190 0.38 -0.7 191,431 - Dshi_0190 0.46 -0.4 191,460 + Dshi_0190 0.52 -0.2 191,465 + Dshi_0190 0.53 +0.1 191,465 + Dshi_0190 0.53 +2.0 191,473 - Dshi_0190 0.54 -0.9 191,473 - Dshi_0190 0.54 -0.1 191,473 - Dshi_0190 0.54 -1.8 191,532 + Dshi_0190 0.66 +1.1 191,539 + Dshi_0190 0.67 -0.2 191,547 - Dshi_0190 0.69 -0.6 191,609 - Dshi_0190 0.81 +0.8 191,611 - Dshi_0190 0.81 -0.4 191,634 + Dshi_0190 0.86 -0.4 191,642 - Dshi_0190 0.87 +0.1 191,849 + Dshi_0191 0.23 -0.4 191,866 + Dshi_0191 0.26 -0.9 191,869 - Dshi_0191 0.26 -0.8 191,888 - Dshi_0191 0.30 -0.5 191,901 - Dshi_0191 0.32 -0.8 191,908 - Dshi_0191 0.33 -0.2 191,950 + Dshi_0191 0.40 -1.4 191,958 + Dshi_0191 0.42 +0.1 191,998 + Dshi_0191 0.49 -1.4 192,010 + Dshi_0191 0.51 -0.9 192,018 - Dshi_0191 0.52 -1.5 192,018 - Dshi_0191 0.52 +0.1 192,029 - Dshi_0191 0.54 -1.3 192,035 - Dshi_0191 0.55 -0.8 192,039 + Dshi_0191 0.56 -0.6 192,040 + Dshi_0191 0.56 +1.6 192,044 + Dshi_0191 0.57 -1.5 192,093 + Dshi_0191 0.65 -0.6 192,117 + Dshi_0191 0.70 +0.1 192,140 + Dshi_0191 0.74 -0.8 192,142 + Dshi_0191 0.74 -0.9 192,185 - Dshi_0191 0.82 +0.3
Or see this region's nucleotide sequence