Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4194

Experiment: BHIS with Fusidic 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.002 mg/ml
5,529,456	-		BT4193	0.67	-1.8
5,529,539	+		BT4193	0.71	-1.0
5,529,539	+		BT4193	0.71	-0.5
5,529,539	+		BT4193	0.71	-1.0
5,529,590	-		BT4193	0.73	-1.0
5,529,590	-		BT4193	0.73	-1.2
5,529,591	+		BT4193	0.73	+0.4
5,529,684	+		BT4193	0.77	-2.9
5,529,789	-		BT4193	0.82	+1.0
5,529,818	-		BT4193	0.83	-2.4
5,529,819	+		BT4193	0.83	-0.3
5,529,820	-		BT4193	0.83	-1.4
5,529,820	-		BT4193	0.83	-1.4
5,529,821	+		BT4193	0.84	-1.3
5,529,838	+		BT4193	0.84	-1.9
5,529,907	+		BT4193	0.87	-2.2
5,529,907	+		BT4193	0.87	-0.8
5,529,908	-		BT4193	0.87	-1.0
5,530,167	+				-0.8
5,530,271	-				-0.6
5,530,293	-				+0.1
5,530,301	-				-3.0
5,530,363	+				-1.1
5,530,363	+				-1.9
5,530,364	-				-2.3
5,530,490	-				+0.1
5,530,616	-		BT4194	0.17	-1.9
5,530,666	+		BT4194	0.22	-0.6
5,530,671	+		BT4194	0.23	-1.6
5,530,732	+		BT4194	0.29	-0.6
5,530,733	-		BT4194	0.29	+0.8
5,530,799	-		BT4194	0.36	-1.6
5,530,822	-		BT4194	0.39	-1.1
5,530,856	+		BT4194	0.42	-2.3
5,530,857	-		BT4194	0.43	+0.2
5,530,900	+		BT4194	0.47	-1.6
5,531,071	+		BT4194	0.65	-1.9
5,531,128	-		BT4194	0.71	+0.7
5,531,141	-		BT4194	0.72	-2.1
5,531,143	+		BT4194	0.73	-1.0
5,531,143	+		BT4194	0.73	-1.1
5,531,144	-		BT4194	0.73	-1.6
5,531,253	+		BT4194	0.84	+2.0
5,531,254	-		BT4194	0.84	-1.6
5,531,420	-				-0.1
5,531,472	+		BT4195	0.20	-1.8
5,531,551	+		BT4195	0.57	-0.7
5,531,640	-				-0.8
5,531,669	+				+0.4
5,531,748	-				-1.6
5,531,772	+		BT4196	0.17	-0.2
5,532,008	-				-3.0
5,532,021	-				+0.7
5,532,024	-				-2.6
5,532,062	-				-1.9
5,532,064	-				-0.5
5,532,064	-				-2.8
5,532,074	+				+1.3
5,532,075	-				-0.9
5,532,075	-				-1.3
5,532,098	+				+0.5
5,532,099	-				-2.7
5,532,101	-				-2.7
5,532,101	-				+1.2
5,532,185	+		BT4197	0.24	-0.3
5,532,198	+		BT4197	0.28	-0.2
5,532,208	-		BT4197	0.31	-0.0
5,532,215	+		BT4197	0.34	-0.6
5,532,234	-		BT4197	0.40	-1.3
5,532,237	+		BT4197	0.41	+3.0
5,532,240	+		BT4197	0.42	-0.3
5,532,282	-		BT4197	0.56	-1.1
5,532,344	+		BT4197	0.76	-1.6
5,532,345	-		BT4197	0.76	+0.1
5,532,367	-		BT4197	0.83	+0.4
5,532,377	+		BT4197	0.87	-0.3
5,532,401	-				-0.8