Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3959

Experiment: BHIS with Fusidic 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.002 mg/ml
5,148,884	-		BT3958	0.70	-0.0
5,148,913	+		BT3958	0.71	-1.9
5,148,913	+		BT3958	0.71	-1.0
5,148,914	-		BT3958	0.71	+0.2
5,149,108	-		BT3958	0.77	+0.4
5,149,112	+		BT3958	0.77	-1.0
5,149,177	-		BT3958	0.79	-2.9
5,149,266	-		BT3958	0.82	-2.1
5,149,266	-		BT3958	0.82	-0.7
5,149,275	+		BT3958	0.82	-0.3
5,149,291	-		BT3958	0.83	+0.4
5,149,332	+		BT3958	0.84	-0.1
5,149,371	+		BT3958	0.85	-1.0
5,149,453	+		BT3958	0.88	-0.5
5,149,454	-		BT3958	0.88	+0.8
5,149,471	+		BT3958	0.89	-1.9
5,149,533	+				-1.7
5,149,534	-				-0.3
5,149,534	-				+0.3
5,149,639	+				-0.3
5,149,720	-				+0.6
5,149,792	-				-0.3
5,149,792	-				-0.5
5,149,950	-				-1.1
5,150,035	-				-1.2
5,150,035	-				-1.7
5,150,114	-		BT3959	0.13	-1.4
5,150,144	+		BT3959	0.15	-1.0
5,150,144	+		BT3959	0.15	-2.4
5,150,145	-		BT3959	0.15	-0.5
5,150,187	-		BT3959	0.17	-1.6
5,150,304	-		BT3959	0.23	+0.9
5,150,399	-		BT3959	0.28	-3.3
5,150,402	-		BT3959	0.28	-1.6
5,150,407	-		BT3959	0.28	-2.3
5,150,468	-		BT3959	0.31	-0.3
5,150,468	-		BT3959	0.31	-2.2
5,150,471	+		BT3959	0.31	+1.4
5,150,472	-		BT3959	0.32	+0.8
5,150,472	-		BT3959	0.32	-2.4
5,150,472	-		BT3959	0.32	-0.8
5,150,494	+		BT3959	0.33	-0.7
5,150,495	-		BT3959	0.33	-0.1
5,150,495	-		BT3959	0.33	-2.9
5,150,495	-		BT3959	0.33	+2.3
5,150,496	+		BT3959	0.33	-3.3
5,150,540	+		BT3959	0.35	+1.7
5,150,541	-		BT3959	0.35	+0.1
5,150,566	+		BT3959	0.36	-0.9
5,150,670	-		BT3959	0.42	-1.7
5,150,714	-		BT3959	0.44	-2.1
5,150,843	+		BT3959	0.50	-1.9
5,150,844	-		BT3959	0.50	+0.6
5,150,859	-		BT3959	0.51	-1.0
5,150,859	-		BT3959	0.51	+0.5
5,150,879	-		BT3959	0.52	+0.6
5,150,881	+		BT3959	0.52	-0.3
5,150,882	-		BT3959	0.52	-0.1
5,150,882	-		BT3959	0.52	-0.7
5,150,939	+		BT3959	0.55	-1.6
5,150,982	-		BT3959	0.57	+2.3
5,151,000	+		BT3959	0.58	-0.1
5,151,035	+		BT3959	0.60	-0.1
5,151,035	+		BT3959	0.60	-0.5
5,151,048	+		BT3959	0.61	+1.2
5,151,049	-		BT3959	0.61	-1.3
5,151,125	+		BT3959	0.65	-1.7
5,151,151	+		BT3959	0.66	-0.1
5,151,151	+		BT3959	0.66	-1.4
5,151,170	-		BT3959	0.67	-1.1
5,151,203	+		BT3959	0.69	-1.8
5,151,203	+		BT3959	0.69	-1.5
5,151,203	+		BT3959	0.69	-1.6
5,151,203	+		BT3959	0.69	-1.0
5,151,227	-		BT3959	0.70	+1.3
5,151,227	-		BT3959	0.70	+0.8
5,151,227	-		BT3959	0.70	+1.3
5,151,227	-		BT3959	0.70	-1.3
5,151,248	+		BT3959	0.71	-1.5
5,151,249	-		BT3959	0.71	-1.4
5,151,341	+		BT3959	0.76	+1.3
5,151,342	-				-0.3
5,151,342	-		BT3959	0.76	+0.3
5,151,351	-		BT3959	0.76	-0.7
5,151,394	+		BT3959	0.78	-1.1
5,151,395	-		BT3959	0.78	-0.5
5,151,398	+		BT3959	0.79	-1.4
5,151,398	+		BT3959	0.79	-1.5
5,151,399	-		BT3959	0.79	+0.5
5,151,399	-		BT3959	0.79	+0.6
5,151,399	-		BT3959	0.79	-2.7
5,151,399	-		BT3959	0.79	-1.1
5,151,399	-		BT3959	0.79	-1.3
5,151,407	-		BT3959	0.79	+1.1
5,151,438	-		BT3959	0.81	+0.9
5,151,447	+		BT3959	0.81	-0.4
5,151,448	-		BT3959	0.81	-2.0
5,151,451	+		BT3959	0.81	-0.2
5,151,452	-		BT3959	0.81	-0.7
5,151,494	-		BT3959	0.84	-1.3
5,151,595	+		BT3959	0.89	-2.4
5,151,626	-				-0.3
5,151,629	+				-0.6
5,151,629	+				+1.3
5,151,630	-				+0.4
5,151,656	-				-1.0
5,151,665	-				-2.7
5,151,815	+				+0.1
5,151,816	-				-1.0
5,151,816	-				+1.0
5,151,816	-				+0.9
5,151,819	-				+0.3
5,151,882	+				-1.6
5,151,883	-				-1.7
5,151,892	-				+0.6
5,151,892	-				-1.4
5,151,946	-				+0.4
5,151,995	-				-0.3
5,152,034	+		BT3960	0.10	-2.1
5,152,035	-		BT3960	0.10	-3.5
5,152,035	-		BT3960	0.10	-2.5
5,152,039	-		BT3960	0.11	-0.3
5,152,039	-		BT3960	0.11	-1.6
5,152,061	-		BT3960	0.12	-0.1
5,152,081	+				+1.3
5,152,155	-		BT3960	0.18	-1.0
5,152,155	-		BT3960	0.18	-1.7
5,152,159	+		BT3960	0.19	-1.0
5,152,163	+		BT3960	0.19	+0.7
5,152,164	-		BT3960	0.19	-2.0
5,152,164	-		BT3960	0.19	-2.4
5,152,198	+		BT3960	0.21	-0.6
5,152,198	+		BT3960	0.21	-2.6
5,152,199	-		BT3960	0.21	-0.6
5,152,278	-		BT3960	0.26	-1.5
5,152,294	+		BT3960	0.27	-0.5
5,152,295	-		BT3960	0.28	-1.0
5,152,298	-		BT3960	0.28	+0.9
5,152,361	+		BT3960	0.32	-0.6
5,152,385	+		BT3960	0.33	-2.0
5,152,440	+		BT3960	0.37	+1.0
5,152,501	+		BT3960	0.41	-2.0
5,152,502	-		BT3960	0.41	-2.1
5,152,668	+		BT3960	0.52	-0.3
5,152,669	-		BT3960	0.52	-1.0
5,152,669	-		BT3960	0.52	-2.0
5,152,723	-		BT3960	0.56	+0.2
5,152,764	-		BT3960	0.58	-1.0
5,152,769	+		BT3960	0.59	-0.9