Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3676

Experiment: BHIS with Fusidic 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.002 mg/ml
4,769,017	+		BT3675	0.30	-1.2
4,769,018	-		BT3675	0.30	+0.9
4,769,051	+		BT3675	0.33	-0.1
4,769,051	+		BT3675	0.33	-0.2
4,769,055	+		BT3675	0.33	+0.9
4,769,060	+		BT3675	0.34	+0.4
4,769,061	-		BT3675	0.34	+0.3
4,769,079	+		BT3675	0.36	+0.5
4,769,110	+		BT3675	0.39	-3.0
4,769,110	+		BT3675	0.39	-0.8
4,769,113	+		BT3675	0.39	+0.9
4,769,196	-		BT3675	0.48	-0.2
4,769,225	-		BT3675	0.50	+0.2
4,769,275	-		BT3675	0.55	+1.8
4,769,329	+		BT3675	0.61	+1.8
4,769,365	-		BT3675	0.64	-0.4
4,769,366	+		BT3675	0.64	+1.4
4,769,385	-		BT3675	0.66	-1.4
4,769,385	-		BT3675	0.66	+0.2
4,769,565	+		BT3675	0.84	+0.4
4,769,591	+		BT3675	0.87	-0.2
4,769,592	-		BT3675	0.87	-1.7
4,769,597	-		BT3675	0.88	-0.2
4,769,623	+				-1.6
4,769,624	-				-1.0
4,769,647	-				+2.9
4,769,683	+				-1.5
4,769,729	-				-2.7
4,769,729	-				-0.9
4,769,747	+				-3.0
4,769,748	-				-4.3
4,769,752	+				-2.0
4,769,793	+				-3.0
4,769,794	-				-0.3
4,769,797	+				-0.2
4,769,797	+				+1.4
4,769,846	-				-0.8
4,769,889	+				+0.6
4,770,018	+				+0.4
4,770,042	+				-1.3
4,770,043	-				+0.3
4,770,117	-		BT3676	0.10	-1.0
4,770,138	+		BT3676	0.12	-1.0
4,770,149	+		BT3676	0.12	+0.4
4,770,149	+		BT3676	0.12	+1.0
4,770,150	-		BT3676	0.12	+0.1
4,770,150	-		BT3676	0.12	+1.1
4,770,150	-		BT3676	0.12	+1.8
4,770,159	-				+0.8
4,770,160	+		BT3676	0.13	+0.4
4,770,225	+		BT3676	0.17	-1.0
4,770,298	+		BT3676	0.21	-0.8
4,770,299	-		BT3676	0.21	+1.7
4,770,338	+		BT3676	0.23	-3.2
4,770,347	-		BT3676	0.24	+2.4
4,770,347	-		BT3676	0.24	-0.6
4,770,420	-		BT3676	0.28	-2.0
4,770,434	-		BT3676	0.28	-0.8
4,770,457	+		BT3676	0.30	-0.5
4,770,457	+		BT3676	0.30	-1.2
4,770,457	+		BT3676	0.30	+0.4
4,770,458	-		BT3676	0.30	-0.6
4,770,462	-		BT3676	0.30	+0.6
4,770,462	-		BT3676	0.30	+0.5
4,770,562	-		BT3676	0.36	-0.9
4,770,598	+		BT3676	0.38	-2.3
4,770,623	+		BT3676	0.39	-0.6
4,770,632	+		BT3676	0.40	-2.7
4,770,633	-		BT3676	0.40	+0.9
4,770,634	+		BT3676	0.40	+0.2
4,770,664	+		BT3676	0.42	+1.4
4,770,686	-		BT3676	0.43	+0.1
4,770,728	-		BT3676	0.45	-1.8
4,770,800	-		BT3676	0.49	+0.0
4,770,811	+		BT3676	0.50	-1.5
4,770,812	-		BT3676	0.50	+0.2
4,770,862	+		BT3676	0.53	-1.7
4,770,862	+		BT3676	0.53	-2.9
4,770,883	-		BT3676	0.54	-0.8
4,770,883	-		BT3676	0.54	-2.4
4,770,899	-		BT3676	0.55	-1.9
4,770,917	+		BT3676	0.56	+0.5
4,771,029	+		BT3676	0.62	-1.0
4,771,095	-		BT3676	0.66	+0.8
4,771,175	-		BT3676	0.71	+1.4
4,771,175	-		BT3676	0.71	-0.4
4,771,187	+		BT3676	0.71	-0.7
4,771,187	+		BT3676	0.71	+1.2
4,771,187	+		BT3676	0.71	+0.7
4,771,188	-		BT3676	0.71	+0.5
4,771,188	-		BT3676	0.71	+0.3
4,771,188	-		BT3676	0.71	-0.0
4,771,190	-				+2.4
4,771,190	-		BT3676	0.71	+0.8
4,771,191	+		BT3676	0.71	+1.6
4,771,195	-		BT3676	0.72	-1.8
4,771,244	+		BT3676	0.74	-0.1
4,771,441	-		BT3676	0.86	-0.2
4,771,461	-		BT3676	0.87	+0.6
4,771,463	+		BT3676	0.87	-0.3
4,771,496	-		BT3676	0.89	-2.5
4,771,513	-		BT3676	0.90	-0.2
4,771,513	-		BT3676	0.90	-0.2
4,771,530	+				-0.8
4,771,630	+				-1.5
4,771,644	+				+1.4
4,771,645	-				+0.5
4,771,652	+				-0.4
4,771,653	-				-0.6
4,771,653	-				+1.0
4,771,653	-				+1.4
4,771,655	-				+0.4
4,771,655	-				-4.5
4,771,722	-				-2.3
4,771,722	-				-0.8
4,771,734	-				+1.4
4,771,797	-				+3.7
4,771,854	-				+1.5
4,771,868	-				-0.5
4,771,900	-		BT3677	0.10	-1.6
4,771,945	+		BT3677	0.13	-1.3
4,771,945	+		BT3677	0.13	+1.2
4,772,003	+		BT3677	0.15	-0.1
4,772,032	-		BT3677	0.17	+0.3
4,772,064	-		BT3677	0.18	-1.2
4,772,101	-		BT3677	0.20	-2.1
4,772,134	-		BT3677	0.22	+2.4
4,772,304	+		BT3677	0.30	-0.1
4,772,304	+		BT3677	0.30	-2.3
4,772,304	+		BT3677	0.30	-2.2
4,772,341	+		BT3677	0.32	-1.6
4,772,359	+		BT3677	0.33	+0.9
4,772,359	+		BT3677	0.33	+0.2
4,772,360	-		BT3677	0.33	-1.9
4,772,415	+		BT3677	0.36	-0.6
4,772,437	+		BT3677	0.37	+1.4
4,772,441	-		BT3677	0.37	+0.1
4,772,456	-		BT3677	0.38	+0.4
4,772,549	+		BT3677	0.42	-2.5
4,772,553	+		BT3677	0.43	-3.2
4,772,557	+		BT3677	0.43	-0.2
4,772,558	-		BT3677	0.43	+1.9
4,772,563	+		BT3677	0.43	+0.6
4,772,563	+		BT3677	0.43	-0.2
4,772,563	+		BT3677	0.43	+0.7
4,772,563	+		BT3677	0.43	-0.2
4,772,564	-		BT3677	0.43	+0.9
4,772,564	-		BT3677	0.43	+0.4
4,772,564	-		BT3677	0.43	-0.1
4,772,583	+		BT3677	0.44	+0.3
4,772,584	-		BT3677	0.44	-0.1
4,772,593	-		BT3677	0.45	+0.8
4,772,672	+		BT3677	0.49	+1.0