Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3561

Experiment: BHIS with Fusidic 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Fusidic 0.002 mg/ml
4,605,553	-		BT3560	0.64	-1.4
4,605,557	-		BT3560	0.64	-2.5
4,605,557	-		BT3560	0.64	+0.0
4,605,561	+		BT3560	0.64	-1.2
4,605,561	+		BT3560	0.64	-0.4
4,605,622	+		BT3560	0.66	-2.1
4,605,623	-		BT3560	0.66	+1.2
4,605,625	-		BT3560	0.66	+0.7
4,605,706	+		BT3560	0.70	-0.9
4,605,751	+		BT3560	0.71	+0.6
4,605,752	-		BT3560	0.71	+1.6
4,605,754	-		BT3560	0.72	-1.4
4,605,791	-		BT3560	0.73	+0.9
4,605,913	-		BT3560	0.78	-1.7
4,605,932	-		BT3560	0.79	+1.4
4,605,933	+		BT3560	0.79	-2.6
4,605,981	+		BT3560	0.80	-0.2
4,605,982	-		BT3560	0.81	-1.4
4,605,985	-		BT3560	0.81	-0.5
4,606,037	+		BT3560	0.83	-2.6
4,606,058	-		BT3560	0.84	+0.1
4,606,058	-		BT3560	0.84	+0.2
4,606,139	+		BT3560	0.87	-0.4
4,606,144	-		BT3560	0.87	-1.2
4,606,148	+		BT3560	0.87	+0.4
4,606,182	+		BT3560	0.88	+0.2
4,606,203	+		BT3560	0.89	-1.8
4,606,203	+		BT3560	0.89	-1.6
4,606,254	+				-1.2
4,606,265	-				+1.4
4,606,265	-				-2.0
4,606,299	+				-2.6
4,606,371	+				+0.3
4,606,371	+				-2.4
4,606,375	+				-3.0
4,606,375	+				+0.1
4,606,376	-				-1.9
4,606,376	-				+0.4
4,606,395	+				-2.2
4,606,396	-				-0.2
4,606,399	+				+1.4
4,606,400	-				-1.2
4,606,427	-				+0.9
4,606,429	+				-0.1
4,606,430	-				-0.4
4,606,474	+				-0.2
4,606,475	-				-0.4
4,606,478	+				-1.5
4,606,571	-				+0.1
4,606,586	-				-0.2
4,606,607	+		BT3561	0.12	-0.2
4,606,612	+		BT3561	0.12	+0.5
4,606,612	+		BT3561	0.12	+0.5
4,606,612	+		BT3561	0.12	-0.4
4,606,624	-		BT3561	0.14	+0.6
4,606,624	-		BT3561	0.14	+0.9
4,606,624	-		BT3561	0.14	+0.7
4,606,668	-		BT3561	0.19	-1.2
4,606,732	-		BT3561	0.27	+0.6
4,606,732	-		BT3561	0.27	+0.8
4,606,734	+		BT3561	0.27	+1.4
4,606,735	-		BT3561	0.27	+0.4
4,606,737	+		BT3561	0.27	-1.8
4,606,737	+		BT3561	0.27	-1.8
4,606,738	-		BT3561	0.28	+0.5
4,606,798	+		BT3561	0.35	-0.9
4,606,799	-		BT3561	0.35	-0.6
4,606,799	-		BT3561	0.35	-2.1
4,606,806	+		BT3561	0.36	-0.4
4,606,806	+		BT3561	0.36	+1.0
4,606,829	+		BT3561	0.38	+0.9
4,606,830	-		BT3561	0.39	+1.4
4,606,830	-		BT3561	0.39	+0.6
4,606,834	+		BT3561	0.39	+0.4
4,606,884	+		BT3561	0.45	-1.6
4,606,885	-		BT3561	0.45	-0.2
4,606,912	-		BT3561	0.48	+0.3
4,606,915	+		BT3561	0.49	-0.0
4,606,916	-		BT3561	0.49	-0.4
4,606,919	-		BT3561	0.49	-0.2
4,606,919	-		BT3561	0.49	+0.4
4,606,942	+		BT3561	0.52	+0.8
4,606,984	+		BT3561	0.57	-3.5
4,607,048	+		BT3561	0.65	-2.6
4,607,048	+		BT3561	0.65	+0.8
4,607,053	+		BT3561	0.65	+1.4
4,607,070	+		BT3561	0.67	+1.8
4,607,071	-		BT3561	0.68	-0.1
4,607,092	+		BT3561	0.70	+0.5
4,607,092	+		BT3561	0.70	-0.6
4,607,098	+		BT3561	0.71	+0.3
4,607,098	+		BT3561	0.71	+0.1
4,607,119	+		BT3561	0.73	-0.4
4,607,168	-		BT3561	0.79	+0.1
4,607,217	-		BT3561	0.85	-2.4
4,607,217	-		BT3561	0.85	-1.4
4,607,222	-		BT3561	0.86	-0.4
4,607,265	+				-2.1
4,607,266	-				+1.4
4,607,266	-				+1.0
4,607,266	-				-0.6
4,607,269	+				+0.4
4,607,283	-				-0.2
4,607,284	+				-1.9
4,607,291	-				-1.8
4,607,304	+				+0.1
4,607,304	+				-0.7
4,607,309	-				-1.0
4,607,309	-				-3.7
4,607,323	+				-2.6
4,607,336	-				-1.5
4,607,441	+				-0.4
4,607,442	-				-0.3
4,607,442	-				+1.4
4,607,510	+				+0.8
4,607,517	+				+0.2
4,607,543	-				-1.5
4,607,569	+		BT3562	0.10	-0.9
4,607,570	-		BT3562	0.11	-2.1
4,607,596	+		BT3562	0.12	-0.4
4,607,690	-		BT3562	0.17	+1.8
4,607,690	-		BT3562	0.17	+0.2
4,607,704	-		BT3562	0.17	-1.4
4,607,704	-		BT3562	0.17	-0.2
4,607,704	-		BT3562	0.17	+0.5
4,607,780	-		BT3562	0.21	-1.2
4,607,888	-		BT3562	0.27	-0.8
4,607,894	-		BT3562	0.27	+1.4
4,607,993	-		BT3562	0.32	-1.1
4,607,993	-		BT3562	0.32	-0.7
4,608,014	-		BT3562	0.33	-1.6
4,608,037	+		BT3562	0.34	-3.0
4,608,038	-		BT3562	0.34	-1.9
4,608,056	-		BT3562	0.35	+0.6
4,608,068	+		BT3562	0.36	-0.4
4,608,069	-		BT3562	0.36	+2.4
4,608,069	-		BT3562	0.36	+0.1
4,608,070	+		BT3562	0.36	+0.7
4,608,071	-		BT3562	0.36	-0.9
4,608,079	+		BT3562	0.36	+0.8
4,608,079	+		BT3562	0.36	-0.5
4,608,087	-		BT3562	0.37	+0.4
4,608,152	-		BT3562	0.40	-2.3
4,608,183	+		BT3562	0.42	-0.5
4,608,183	+		BT3562	0.42	-0.2
4,608,185	+		BT3562	0.42	-0.9
4,608,192	-		BT3562	0.42	+0.4
4,608,240	+		BT3562	0.45	+2.4
4,608,250	+		BT3562	0.45	+1.0
4,608,250	+		BT3562	0.45	-2.3
4,608,250	+		BT3562	0.45	-1.9
4,608,250	+		BT3562	0.45	+1.9
4,608,251	-		BT3562	0.45	-0.1
4,608,263	-		BT3562	0.46	+1.5
4,608,270	+		BT3562	0.46	-1.3
4,608,298	+		BT3562	0.48	-1.4
4,608,302	-		BT3562	0.48	+1.3