Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVUA0025 overlap by 49 nucleotides DVUA0025 and DVUA0028 are separated by 345 nucleotides DVUA0028 and DVUA0029 are separated by 120 nucleotides
DVUA0024: atoC - sigma-54 interaction domain protein (TIGR), at 29,689 to 30,828
atoC
DVUA0025: DVUA0025 - response regulator receiver domain protein (TIGR), at 30,780 to 31,241
DVUA0025
DVUA0028: DVUA0028 - hypothetical protein (TIGR), at 31,587 to 31,997
DVUA0028
DVUA0029: DVUA0029 - hypothetical protein (TIGR), at 32,118 to 32,798
DVUA0029
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.783 kb on + strand at 29.783 kb on + strand at 29.811 kb on - strand, within atoC at 29.876 kb on + strand, within atoC at 29.876 kb on + strand, within atoC at 29.884 kb on - strand, within atoC at 29.886 kb on - strand, within atoC at 29.968 kb on + strand, within atoC at 30.080 kb on + strand, within atoC at 30.080 kb on + strand, within atoC at 30.131 kb on + strand, within atoC at 30.167 kb on - strand, within atoC at 30.172 kb on + strand, within atoC at 30.218 kb on + strand, within atoC at 30.246 kb on + strand, within atoC at 30.367 kb on - strand, within atoC at 30.441 kb on + strand, within atoC at 30.488 kb on + strand, within atoC at 30.501 kb on - strand, within atoC at 30.587 kb on + strand, within atoC at 30.679 kb on + strand, within atoC at 30.687 kb on - strand, within atoC at 30.687 kb on - strand, within atoC at 30.719 kb on - strand at 30.764 kb on + strand at 30.793 kb on + strand at 30.817 kb on - strand at 30.856 kb on - strand, within DVUA0025 at 30.872 kb on + strand, within DVUA0025 at 30.906 kb on + strand, within DVUA0025 at 30.942 kb on - strand, within DVUA0025 at 30.977 kb on - strand, within DVUA0025 at 31.002 kb on - strand, within DVUA0025 at 31.034 kb on + strand, within DVUA0025 at 31.042 kb on - strand, within DVUA0025 at 31.042 kb on - strand, within DVUA0025 at 31.049 kb on + strand, within DVUA0025 at 31.057 kb on - strand, within DVUA0025 at 31.074 kb on + strand, within DVUA0025 at 31.082 kb on - strand, within DVUA0025 at 31.093 kb on - strand, within DVUA0025 at 31.093 kb on - strand, within DVUA0025 at 31.205 kb on + strand at 31.208 kb on - strand at 31.213 kb on - strand at 31.213 kb on - strand at 31.271 kb on - strand at 31.306 kb on - strand at 31.635 kb on - strand, within DVUA0028 at 31.635 kb on - strand, within DVUA0028 at 31.635 kb on - strand, within DVUA0028 at 31.660 kb on + strand, within DVUA0028
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 29,783 + -0.3 29,783 + -0.2 29,811 - atoC DVUA0024 0.11 -0.6 29,876 + atoC DVUA0024 0.16 +0.3 29,876 + atoC DVUA0024 0.16 +0.1 29,884 - atoC DVUA0024 0.17 -0.1 29,886 - atoC DVUA0024 0.17 -0.2 29,968 + atoC DVUA0024 0.24 -0.9 30,080 + atoC DVUA0024 0.34 +0.2 30,080 + atoC DVUA0024 0.34 -0.2 30,131 + atoC DVUA0024 0.39 +0.2 30,167 - atoC DVUA0024 0.42 +0.0 30,172 + atoC DVUA0024 0.42 -0.4 30,218 + atoC DVUA0024 0.46 -0.2 30,246 + atoC DVUA0024 0.49 +0.0 30,367 - atoC DVUA0024 0.59 -0.9 30,441 + atoC DVUA0024 0.66 -0.4 30,488 + atoC DVUA0024 0.70 +0.0 30,501 - atoC DVUA0024 0.71 +0.0 30,587 + atoC DVUA0024 0.79 +0.3 30,679 + atoC DVUA0024 0.87 +0.2 30,687 - atoC DVUA0024 0.88 +0.5 30,687 - atoC DVUA0024 0.88 -0.5 30,719 - +0.1 30,764 + +0.4 30,793 + -0.6 30,817 - +0.0 30,856 - DVUA0025 0.16 +0.3 30,872 + DVUA0025 0.20 +0.1 30,906 + DVUA0025 0.27 +0.3 30,942 - DVUA0025 0.35 -0.4 30,977 - DVUA0025 0.43 +1.8 31,002 - DVUA0025 0.48 -1.1 31,034 + DVUA0025 0.55 +0.1 31,042 - DVUA0025 0.57 -0.3 31,042 - DVUA0025 0.57 +0.4 31,049 + DVUA0025 0.58 +0.5 31,057 - DVUA0025 0.60 -1.6 31,074 + DVUA0025 0.64 +0.2 31,082 - DVUA0025 0.65 +0.5 31,093 - DVUA0025 0.68 +0.0 31,093 - DVUA0025 0.68 -0.1 31,205 + -0.2 31,208 - +0.0 31,213 - -0.1 31,213 - -0.2 31,271 - -0.7 31,306 - -0.2 31,635 - DVUA0028 0.12 +0.1 31,635 - DVUA0028 0.12 -0.2 31,635 - DVUA0028 0.12 +0.0 31,660 + DVUA0028 0.18 -2.1
Or see this region's nucleotide sequence