Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0042 and DVUA0043 are separated by 52 nucleotides DVUA0043 and DVUA0044 are separated by 61 nucleotides
DVUA0042: DVUA0042 - lipoprotein, putative (TIGR), at 50,590 to 51,912
DVUA0042
DVUA0043: DVUA0043 - polysaccharide deacetylase family protein (TIGR), at 51,965 to 52,816
DVUA0043
DVUA0044: DVUA0044 - conserved hypothetical protein (TIGR), at 52,878 to 53,855
DVUA0044
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 50.981 kb on - strand, within DVUA0042 at 51.092 kb on + strand, within DVUA0042 at 51.131 kb on - strand, within DVUA0042 at 51.377 kb on - strand, within DVUA0042 at 51.390 kb on + strand, within DVUA0042 at 51.403 kb on - strand, within DVUA0042 at 51.474 kb on - strand, within DVUA0042 at 51.517 kb on - strand, within DVUA0042 at 51.597 kb on - strand, within DVUA0042 at 51.606 kb on + strand, within DVUA0042 at 51.755 kb on + strand, within DVUA0042 at 51.771 kb on + strand, within DVUA0042 at 51.779 kb on - strand, within DVUA0042 at 51.830 kb on + strand at 51.831 kb on + strand at 51.846 kb on - strand at 51.890 kb on - strand at 51.940 kb on + strand at 51.999 kb on + strand at 52.031 kb on + strand at 52.042 kb on + strand at 52.069 kb on + strand, within DVUA0043 at 52.077 kb on - strand, within DVUA0043 at 52.102 kb on - strand, within DVUA0043 at 52.112 kb on - strand, within DVUA0043 at 52.135 kb on + strand, within DVUA0043 at 52.135 kb on + strand, within DVUA0043 at 52.188 kb on + strand, within DVUA0043 at 52.195 kb on - strand, within DVUA0043 at 52.223 kb on + strand, within DVUA0043 at 52.240 kb on + strand, within DVUA0043 at 52.247 kb on - strand, within DVUA0043 at 52.248 kb on - strand, within DVUA0043 at 52.291 kb on - strand, within DVUA0043 at 52.327 kb on + strand, within DVUA0043 at 52.348 kb on - strand, within DVUA0043 at 52.431 kb on - strand, within DVUA0043 at 52.511 kb on - strand, within DVUA0043 at 52.538 kb on + strand, within DVUA0043 at 52.561 kb on - strand, within DVUA0043 at 52.627 kb on + strand, within DVUA0043 at 52.748 kb on + strand at 52.800 kb on - strand at 52.895 kb on + strand at 52.895 kb on + strand at 52.910 kb on - strand at 52.971 kb on + strand at 52.979 kb on - strand, within DVUA0044 at 52.999 kb on - strand, within DVUA0044 at 53.128 kb on - strand, within DVUA0044 at 53.140 kb on + strand, within DVUA0044 at 53.155 kb on + strand, within DVUA0044 at 53.291 kb on + strand, within DVUA0044 at 53.317 kb on + strand, within DVUA0044 at 53.317 kb on + strand, within DVUA0044 at 53.317 kb on + strand, within DVUA0044 at 53.325 kb on - strand, within DVUA0044 at 53.330 kb on - strand, within DVUA0044 at 53.332 kb on + strand, within DVUA0044 at 53.345 kb on - strand, within DVUA0044 at 53.345 kb on - strand, within DVUA0044 at 53.351 kb on + strand, within DVUA0044 at 53.351 kb on + strand, within DVUA0044 at 53.351 kb on + strand, within DVUA0044 at 53.359 kb on - strand, within DVUA0044 at 53.433 kb on - strand, within DVUA0044 at 53.754 kb on - strand, within DVUA0044
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 50,981 - DVUA0042 0.30 -0.4 51,092 + DVUA0042 0.38 -1.2 51,131 - DVUA0042 0.41 +0.6 51,377 - DVUA0042 0.59 -0.6 51,390 + DVUA0042 0.60 -0.4 51,403 - DVUA0042 0.61 -0.8 51,474 - DVUA0042 0.67 +0.0 51,517 - DVUA0042 0.70 -0.3 51,597 - DVUA0042 0.76 -0.1 51,606 + DVUA0042 0.77 -1.1 51,755 + DVUA0042 0.88 +0.6 51,771 + DVUA0042 0.89 -0.2 51,779 - DVUA0042 0.90 -0.1 51,830 + +0.1 51,831 + +0.0 51,846 - -0.0 51,890 - -1.2 51,940 + +0.2 51,999 + +0.1 52,031 + -0.3 52,042 + -1.7 52,069 + DVUA0043 0.12 +0.3 52,077 - DVUA0043 0.13 +0.0 52,102 - DVUA0043 0.16 -0.1 52,112 - DVUA0043 0.17 -0.5 52,135 + DVUA0043 0.20 -0.2 52,135 + DVUA0043 0.20 -1.8 52,188 + DVUA0043 0.26 -0.1 52,195 - DVUA0043 0.27 -0.1 52,223 + DVUA0043 0.30 +0.2 52,240 + DVUA0043 0.32 -0.3 52,247 - DVUA0043 0.33 -0.3 52,248 - DVUA0043 0.33 -0.8 52,291 - DVUA0043 0.38 -0.3 52,327 + DVUA0043 0.42 -1.3 52,348 - DVUA0043 0.45 -0.7 52,431 - DVUA0043 0.55 -0.2 52,511 - DVUA0043 0.64 +0.2 52,538 + DVUA0043 0.67 -0.3 52,561 - DVUA0043 0.70 +0.8 52,627 + DVUA0043 0.78 -0.1 52,748 + +0.3 52,800 - +0.2 52,895 + -1.1 52,895 + -0.3 52,910 - -1.1 52,971 + +0.4 52,979 - DVUA0044 0.10 +0.2 52,999 - DVUA0044 0.12 -0.2 53,128 - DVUA0044 0.26 +0.2 53,140 + DVUA0044 0.27 -0.4 53,155 + DVUA0044 0.28 -0.2 53,291 + DVUA0044 0.42 -0.2 53,317 + DVUA0044 0.45 -0.4 53,317 + DVUA0044 0.45 -1.1 53,317 + DVUA0044 0.45 -0.4 53,325 - DVUA0044 0.46 -0.1 53,330 - DVUA0044 0.46 -0.2 53,332 + DVUA0044 0.46 -0.2 53,345 - DVUA0044 0.48 +0.2 53,345 - DVUA0044 0.48 -0.5 53,351 + DVUA0044 0.48 +0.2 53,351 + DVUA0044 0.48 -0.7 53,351 + DVUA0044 0.48 +0.4 53,359 - DVUA0044 0.49 -0.2 53,433 - DVUA0044 0.57 -0.8 53,754 - DVUA0044 0.90 -0.1
Or see this region's nucleotide sequence