Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0563 and ylbG overlap by 20 nucleotides ylbG and gap-1 are separated by 211 nucleotides gap-1 and DVU0566 are separated by 19 nucleotides DVU0566 and DVU0567 are separated by 214 nucleotides
DVU0563: DVU0563 - ISD1, transposase OrfB (TIGR), at 628,675 to 629,499
DVU0563
DVU0564: ylbG - ISDvu4, transposase, truncation (TIGR), at 629,480 to 629,875
ylbG
DVU0565: gap-1 - glyceraldehyde 3-phosphate dehydrogenase (TIGR), at 630,087 to 631,103
gap-1
DVU0566: DVU0566 - GAF domain protein (TIGR), at 631,123 to 631,680
DVU0566
DVU0567: DVU0567 - TerC family protein (TIGR), at 631,895 to 632,974
DVU0567
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 630.072 kb on - strand at 630.149 kb on - strand at 630.176 kb on - strand at 630.194 kb on - strand, within gap-1 at 630.235 kb on + strand, within gap-1 at 630.243 kb on - strand, within gap-1 at 630.273 kb on + strand, within gap-1 at 630.283 kb on + strand, within gap-1 at 630.289 kb on + strand, within gap-1 at 630.302 kb on - strand, within gap-1 at 630.436 kb on - strand, within gap-1 at 630.450 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.455 kb on + strand, within gap-1 at 630.458 kb on - strand, within gap-1 at 630.515 kb on - strand, within gap-1 at 630.635 kb on - strand, within gap-1 at 630.682 kb on - strand, within gap-1 at 630.721 kb on + strand, within gap-1 at 630.767 kb on - strand, within gap-1 at 630.964 kb on + strand, within gap-1 at 630.972 kb on + strand, within gap-1 at 631.017 kb on - strand at 631.285 kb on + strand, within DVU0566 at 631.335 kb on + strand, within DVU0566 at 631.348 kb on - strand, within DVU0566 at 631.407 kb on + strand, within DVU0566 at 631.422 kb on - strand, within DVU0566 at 631.469 kb on - strand, within DVU0566 at 631.476 kb on - strand, within DVU0566 at 631.623 kb on - strand, within DVU0566 at 631.635 kb on - strand at 631.696 kb on + strand at 631.751 kb on - strand at 631.968 kb on + strand at 631.973 kb on + strand at 631.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 630,072 - -2.0 630,149 - +0.5 630,176 - -0.2 630,194 - gap-1 DVU0565 0.11 +0.1 630,235 + gap-1 DVU0565 0.15 +0.1 630,243 - gap-1 DVU0565 0.15 +0.1 630,273 + gap-1 DVU0565 0.18 +0.1 630,283 + gap-1 DVU0565 0.19 +0.5 630,289 + gap-1 DVU0565 0.20 -0.2 630,302 - gap-1 DVU0565 0.21 +0.3 630,436 - gap-1 DVU0565 0.34 -0.1 630,450 + gap-1 DVU0565 0.36 +0.0 630,455 + gap-1 DVU0565 0.36 +0.1 630,455 + gap-1 DVU0565 0.36 -0.5 630,455 + gap-1 DVU0565 0.36 +0.6 630,455 + gap-1 DVU0565 0.36 -0.6 630,455 + gap-1 DVU0565 0.36 +0.1 630,458 - gap-1 DVU0565 0.36 +0.0 630,515 - gap-1 DVU0565 0.42 +0.2 630,635 - gap-1 DVU0565 0.54 -0.6 630,682 - gap-1 DVU0565 0.59 +0.6 630,721 + gap-1 DVU0565 0.62 -0.2 630,767 - gap-1 DVU0565 0.67 -1.7 630,964 + gap-1 DVU0565 0.86 +0.4 630,972 + gap-1 DVU0565 0.87 -0.0 631,017 - -1.0 631,285 + DVU0566 0.29 -0.2 631,335 + DVU0566 0.38 +0.8 631,348 - DVU0566 0.40 -0.3 631,407 + DVU0566 0.51 -1.8 631,422 - DVU0566 0.54 +1.5 631,469 - DVU0566 0.62 +0.2 631,476 - DVU0566 0.63 -0.1 631,623 - DVU0566 0.90 -2.3 631,635 - +0.1 631,696 + -0.7 631,751 - -0.2 631,968 + -0.1 631,973 + -0.5 631,981 - -0.3
Or see this region's nucleotide sequence