Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribF and DVU0451 are separated by 4 nucleotides DVU0451 and DVU0452 are separated by 139 nucleotides
DVU0450: ribF - riboflavin biosynthesis protein RibF (TIGR), at 514,816 to 515,760
ribF
DVU0451: DVU0451 - chloride channel family protein (TIGR), at 515,765 to 517,576
DVU0451
DVU0452: DVU0452 - hypothetical protein (TIGR), at 517,716 to 518,939
DVU0452
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -1
0
1
2 at 514.802 kb on - strand at 515.765 kb on + strand at 515.814 kb on - strand at 515.850 kb on - strand at 515.864 kb on + strand at 515.864 kb on + strand at 515.872 kb on - strand at 515.872 kb on - strand at 515.872 kb on - strand at 515.917 kb on + strand at 516.084 kb on + strand, within DVU0451 at 516.092 kb on + strand, within DVU0451 at 516.184 kb on - strand, within DVU0451 at 516.191 kb on - strand, within DVU0451 at 516.259 kb on - strand, within DVU0451 at 516.284 kb on - strand, within DVU0451 at 516.291 kb on - strand, within DVU0451 at 516.353 kb on - strand, within DVU0451 at 516.369 kb on + strand, within DVU0451 at 516.451 kb on - strand, within DVU0451 at 516.556 kb on + strand, within DVU0451 at 516.556 kb on + strand, within DVU0451 at 516.564 kb on - strand, within DVU0451 at 516.584 kb on - strand, within DVU0451 at 516.599 kb on - strand, within DVU0451 at 516.599 kb on - strand, within DVU0451 at 516.673 kb on + strand, within DVU0451 at 516.719 kb on + strand, within DVU0451 at 516.727 kb on - strand, within DVU0451 at 516.729 kb on + strand, within DVU0451 at 516.739 kb on + strand, within DVU0451 at 516.812 kb on + strand, within DVU0451 at 516.841 kb on - strand, within DVU0451 at 516.971 kb on + strand, within DVU0451 at 516.985 kb on - strand, within DVU0451 at 516.995 kb on - strand, within DVU0451 at 517.024 kb on + strand, within DVU0451 at 517.062 kb on - strand, within DVU0451 at 517.062 kb on - strand, within DVU0451 at 517.096 kb on - strand, within DVU0451 at 517.096 kb on - strand, within DVU0451 at 517.158 kb on + strand, within DVU0451 at 517.205 kb on + strand, within DVU0451 at 517.267 kb on - strand, within DVU0451 at 517.268 kb on + strand, within DVU0451 at 517.365 kb on + strand, within DVU0451 at 517.423 kb on + strand at 517.423 kb on + strand at 517.446 kb on - strand at 517.457 kb on + strand at 517.531 kb on + strand at 517.539 kb on - strand at 517.539 kb on - strand at 517.539 kb on - strand at 517.614 kb on + strand at 517.622 kb on + strand at 517.639 kb on - strand at 517.683 kb on + strand at 517.760 kb on - strand at 517.798 kb on + strand at 517.833 kb on + strand at 517.838 kb on + strand at 517.840 kb on - strand, within DVU0452 at 517.851 kb on - strand, within DVU0452 at 517.893 kb on + strand, within DVU0452 at 517.955 kb on - strand, within DVU0452 at 518.180 kb on - strand, within DVU0452 at 518.208 kb on + strand, within DVU0452 at 518.234 kb on - strand, within DVU0452 at 518.257 kb on - strand, within DVU0452 at 518.259 kb on - strand, within DVU0452 at 518.301 kb on + strand, within DVU0452 at 518.331 kb on - strand, within DVU0452 at 518.406 kb on - strand, within DVU0452 at 518.444 kb on + strand, within DVU0452 at 518.473 kb on + strand, within DVU0452 at 518.563 kb on + strand, within DVU0452
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 514,802 - +0.0 515,765 + -1.6 515,814 - +0.2 515,850 - +0.6 515,864 + +1.0 515,864 + -0.2 515,872 - +0.4 515,872 - -1.0 515,872 - -0.6 515,917 + +0.5 516,084 + DVU0451 0.18 +0.2 516,092 + DVU0451 0.18 +0.3 516,184 - DVU0451 0.23 +0.5 516,191 - DVU0451 0.24 +0.4 516,259 - DVU0451 0.27 -0.2 516,284 - DVU0451 0.29 -1.7 516,291 - DVU0451 0.29 +0.4 516,353 - DVU0451 0.32 +0.0 516,369 + DVU0451 0.33 +0.2 516,451 - DVU0451 0.38 +0.6 516,556 + DVU0451 0.44 +0.2 516,556 + DVU0451 0.44 +0.4 516,564 - DVU0451 0.44 +0.7 516,584 - DVU0451 0.45 +0.5 516,599 - DVU0451 0.46 +1.6 516,599 - DVU0451 0.46 +0.6 516,673 + DVU0451 0.50 -0.2 516,719 + DVU0451 0.53 -0.1 516,727 - DVU0451 0.53 -0.3 516,729 + DVU0451 0.53 +0.5 516,739 + DVU0451 0.54 +0.5 516,812 + DVU0451 0.58 +0.6 516,841 - DVU0451 0.59 +0.6 516,971 + DVU0451 0.67 -0.3 516,985 - DVU0451 0.67 +0.6 516,995 - DVU0451 0.68 +0.6 517,024 + DVU0451 0.69 +0.3 517,062 - DVU0451 0.72 +0.6 517,062 - DVU0451 0.72 -0.6 517,096 - DVU0451 0.73 -0.9 517,096 - DVU0451 0.73 +0.6 517,158 + DVU0451 0.77 +0.0 517,205 + DVU0451 0.79 +0.8 517,267 - DVU0451 0.83 -0.4 517,268 + DVU0451 0.83 +0.1 517,365 + DVU0451 0.88 -1.1 517,423 + -0.0 517,423 + +0.0 517,446 - +0.7 517,457 + +0.3 517,531 + -0.3 517,539 - -0.2 517,539 - +0.8 517,539 - -0.9 517,614 + -0.2 517,622 + -0.0 517,639 - -1.1 517,683 + +1.9 517,760 - -0.1 517,798 + -0.3 517,833 + +0.3 517,838 + -0.1 517,840 - DVU0452 0.10 -0.2 517,851 - DVU0452 0.11 -1.2 517,893 + DVU0452 0.14 -0.7 517,955 - DVU0452 0.20 +0.5 518,180 - DVU0452 0.38 -0.1 518,208 + DVU0452 0.40 -0.5 518,234 - DVU0452 0.42 -1.3 518,257 - DVU0452 0.44 -0.1 518,259 - DVU0452 0.44 +0.7 518,301 + DVU0452 0.48 -0.1 518,331 - DVU0452 0.50 -1.0 518,406 - DVU0452 0.56 +0.7 518,444 + DVU0452 0.59 +0.2 518,473 + DVU0452 0.62 +0.0 518,563 + DVU0452 0.69 -1.3
Or see this region's nucleotide sequence