Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0446 and DVU0447 overlap by 8 nucleotides DVU0447 and gmd are separated by 393 nucleotides gmd and DVU0449 overlap by 13 nucleotides
DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589
DVU0446
DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899
DVU0447
DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438
gmd
DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967
DVU0449
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.330 kb on + strand, within DVU0446 at 507.415 kb on + strand, within DVU0446 at 507.446 kb on + strand at 507.451 kb on - strand at 507.477 kb on + strand at 507.535 kb on - strand at 507.560 kb on - strand at 507.560 kb on - strand at 507.562 kb on + strand at 507.562 kb on + strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.607 kb on - strand at 507.685 kb on + strand, within DVU0447 at 507.719 kb on + strand, within DVU0447 at 507.782 kb on + strand, within DVU0447 at 507.800 kb on + strand, within DVU0447 at 507.811 kb on + strand, within DVU0447 at 507.819 kb on - strand, within DVU0447 at 507.863 kb on - strand, within DVU0447 at 507.898 kb on - strand at 507.907 kb on + strand at 507.915 kb on - strand at 507.917 kb on - strand at 507.998 kb on - strand at 507.998 kb on - strand at 508.016 kb on + strand at 508.024 kb on - strand at 508.024 kb on - strand at 508.048 kb on - strand at 508.053 kb on - strand at 508.080 kb on + strand at 508.088 kb on - strand at 508.374 kb on - strand at 508.536 kb on + strand, within gmd at 508.544 kb on - strand, within gmd at 508.651 kb on + strand, within gmd at 508.826 kb on - strand, within gmd at 508.866 kb on + strand, within gmd at 508.957 kb on - strand, within gmd at 508.959 kb on + strand, within gmd at 509.062 kb on - strand, within gmd at 509.474 kb on + strand at 509.503 kb on - strand at 509.508 kb on - strand at 509.615 kb on - strand at 509.619 kb on + strand at 509.705 kb on + strand at 509.793 kb on - strand at 509.836 kb on + strand at 509.844 kb on - strand at 509.844 kb on - strand at 509.865 kb on + strand at 509.873 kb on - strand at 509.882 kb on - strand, within DVU0449 at 509.961 kb on - strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.143 kb on + strand, within DVU0449 at 510.176 kb on + strand, within DVU0449 at 510.184 kb on - strand, within DVU0449 at 510.218 kb on - strand, within DVU0449 at 510.220 kb on - strand, within DVU0449 at 510.240 kb on + strand, within DVU0449 at 510.265 kb on - strand, within DVU0449 at 510.344 kb on - strand, within DVU0449 at 510.349 kb on + strand, within DVU0449 at 510.359 kb on + strand, within DVU0449 at 510.370 kb on - strand, within DVU0449 at 510.417 kb on + strand, within DVU0449
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 507,330 + DVU0446 0.83 +1.2 507,415 + DVU0446 0.89 -0.4 507,446 + -0.5 507,451 - -2.1 507,477 + -0.0 507,535 - -0.8 507,560 - +0.2 507,560 - +0.2 507,562 + -1.6 507,562 + -0.3 507,570 - -0.1 507,570 - -0.0 507,570 - -1.4 507,607 - +0.1 507,685 + DVU0447 0.32 -0.7 507,719 + DVU0447 0.43 +0.2 507,782 + DVU0447 0.63 -0.7 507,800 + DVU0447 0.69 +0.4 507,811 + DVU0447 0.72 -0.9 507,819 - DVU0447 0.75 +0.1 507,863 - DVU0447 0.88 -0.2 507,898 - -0.4 507,907 + +0.6 507,915 - +0.1 507,917 - -0.2 507,998 - +0.0 507,998 - -1.4 508,016 + +0.1 508,024 - +0.1 508,024 - +0.1 508,048 - -0.5 508,053 - -0.0 508,080 + -0.0 508,088 - -0.3 508,374 - -0.6 508,536 + gmd DVU0448 0.21 -1.0 508,544 - gmd DVU0448 0.22 -1.8 508,651 + gmd DVU0448 0.31 -0.7 508,826 - gmd DVU0448 0.47 -1.8 508,866 + gmd DVU0448 0.50 +0.1 508,957 - gmd DVU0448 0.58 -0.9 508,959 + gmd DVU0448 0.58 -0.5 509,062 - gmd DVU0448 0.67 +0.3 509,474 + -0.5 509,503 - -0.2 509,508 - -1.0 509,615 - -0.2 509,619 + -0.1 509,705 + +0.0 509,793 - -0.3 509,836 + -0.6 509,844 - -0.2 509,844 - +0.2 509,865 + -0.2 509,873 - -0.9 509,882 - DVU0449 0.10 +0.4 509,961 - DVU0449 0.12 +0.4 510,114 + DVU0449 0.15 +0.5 510,114 + DVU0449 0.15 +0.3 510,114 + DVU0449 0.15 -1.0 510,127 - DVU0449 0.15 +0.4 510,127 - DVU0449 0.15 +0.2 510,127 - DVU0449 0.15 +0.2 510,127 - DVU0449 0.15 -0.3 510,143 + DVU0449 0.16 -0.1 510,176 + DVU0449 0.17 +0.2 510,184 - DVU0449 0.17 -0.5 510,218 - DVU0449 0.17 -0.2 510,220 - DVU0449 0.17 -0.3 510,240 + DVU0449 0.18 +0.3 510,265 - DVU0449 0.18 -0.1 510,344 - DVU0449 0.20 -0.5 510,349 + DVU0449 0.20 +0.4 510,359 + DVU0449 0.21 -1.3 510,370 - DVU0449 0.21 -0.2 510,417 + DVU0449 0.22 -0.0
Or see this region's nucleotide sequence