Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0422 and DVU0423 are separated by 152 nucleotides DVU0423 and cls are separated by 152 nucleotides cls and DVU0425 are separated by 268 nucleotides
DVU0422: DVU0422 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 475,147 to 478,365
DVU0422
DVU0423: DVU0423 - universal stress protein family (TIGR), at 478,518 to 478,943
DVU0423
DVU0424: cls - cardiolipin synthetase (TIGR), at 479,096 to 480,541
cls
DVU0425: DVU0425 - hypothetical protein (TIGR), at 480,810 to 481,616
DVU0425
Position (kb) 479
480
481 Strain fitness (log2 ratio) -2
-1
0
1 at 478.160 kb on - strand at 478.208 kb on + strand at 478.208 kb on + strand at 478.208 kb on + strand at 478.216 kb on - strand at 478.297 kb on + strand at 478.395 kb on - strand at 478.429 kb on + strand at 478.437 kb on - strand at 478.437 kb on - strand at 478.437 kb on - strand at 478.459 kb on - strand at 478.507 kb on - strand at 478.509 kb on + strand at 478.517 kb on - strand at 478.591 kb on + strand, within DVU0423 at 478.595 kb on + strand, within DVU0423 at 478.610 kb on - strand, within DVU0423 at 478.615 kb on + strand, within DVU0423 at 478.634 kb on - strand, within DVU0423 at 478.644 kb on - strand, within DVU0423 at 478.648 kb on - strand, within DVU0423 at 478.658 kb on + strand, within DVU0423 at 478.727 kb on + strand, within DVU0423 at 478.752 kb on + strand, within DVU0423 at 478.752 kb on + strand, within DVU0423 at 478.798 kb on - strand, within DVU0423 at 478.878 kb on + strand, within DVU0423 at 478.886 kb on - strand, within DVU0423 at 479.006 kb on + strand at 479.006 kb on + strand at 479.014 kb on - strand at 479.021 kb on + strand at 479.029 kb on - strand at 479.029 kb on - strand at 479.067 kb on + strand at 479.075 kb on - strand at 479.075 kb on - strand at 479.107 kb on + strand at 479.112 kb on + strand at 479.112 kb on + strand at 479.202 kb on + strand at 479.210 kb on - strand at 479.232 kb on - strand at 479.444 kb on - strand, within cls at 479.455 kb on + strand, within cls at 479.455 kb on + strand, within cls at 479.455 kb on + strand, within cls at 479.455 kb on + strand, within cls at 479.463 kb on - strand, within cls at 479.463 kb on - strand, within cls at 479.463 kb on - strand, within cls at 479.463 kb on - strand, within cls at 479.476 kb on + strand, within cls at 479.525 kb on + strand, within cls at 479.525 kb on + strand, within cls at 479.531 kb on - strand, within cls at 479.554 kb on + strand, within cls at 479.692 kb on - strand, within cls at 479.790 kb on + strand, within cls at 479.843 kb on + strand, within cls at 479.870 kb on - strand, within cls at 479.892 kb on - strand, within cls at 479.924 kb on - strand, within cls at 479.929 kb on + strand, within cls at 479.976 kb on + strand, within cls at 479.977 kb on + strand, within cls at 480.003 kb on + strand, within cls at 480.003 kb on + strand, within cls at 480.003 kb on + strand, within cls at 480.003 kb on + strand, within cls at 480.011 kb on - strand, within cls at 480.011 kb on - strand, within cls at 480.011 kb on - strand, within cls at 480.011 kb on - strand, within cls at 480.121 kb on - strand, within cls at 480.170 kb on - strand, within cls at 480.224 kb on - strand, within cls at 480.242 kb on + strand, within cls at 480.357 kb on + strand, within cls at 480.397 kb on - strand at 480.499 kb on + strand at 480.499 kb on + strand at 480.507 kb on - strand at 480.514 kb on + strand at 480.522 kb on - strand at 480.530 kb on + strand at 480.537 kb on + strand at 480.587 kb on - strand at 480.587 kb on - strand at 480.605 kb on + strand at 480.656 kb on - strand at 480.671 kb on - strand at 480.698 kb on + strand at 480.706 kb on - strand at 480.770 kb on - strand at 480.770 kb on - strand at 480.788 kb on + strand at 480.950 kb on + strand, within DVU0425 at 481.036 kb on + strand, within DVU0425 at 481.084 kb on - strand, within DVU0425 at 481.118 kb on + strand, within DVU0425 at 481.126 kb on - strand, within DVU0425 at 481.161 kb on - strand, within DVU0425 at 481.173 kb on + strand, within DVU0425 at 481.187 kb on + strand, within DVU0425 at 481.207 kb on - strand, within DVU0425 at 481.226 kb on - strand, within DVU0425 at 481.240 kb on - strand, within DVU0425 at 481.344 kb on - strand, within DVU0425 at 481.365 kb on - strand, within DVU0425 at 481.417 kb on - strand, within DVU0425 at 481.421 kb on + strand, within DVU0425 at 481.469 kb on + strand, within DVU0425 at 481.496 kb on - strand, within DVU0425 at 481.525 kb on - strand, within DVU0425
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 478,160 - +1.5 478,208 + -0.1 478,208 + -1.2 478,208 + -2.2 478,216 - +0.2 478,297 + -0.2 478,395 - +0.0 478,429 + -0.4 478,437 - +0.7 478,437 - -0.0 478,437 - -0.2 478,459 - -1.1 478,507 - -1.0 478,509 + +0.2 478,517 - -0.0 478,591 + DVU0423 0.17 -0.0 478,595 + DVU0423 0.18 -0.1 478,610 - DVU0423 0.22 -0.3 478,615 + DVU0423 0.23 -0.0 478,634 - DVU0423 0.27 -0.7 478,644 - DVU0423 0.30 -0.0 478,648 - DVU0423 0.31 -0.6 478,658 + DVU0423 0.33 -0.3 478,727 + DVU0423 0.49 -0.8 478,752 + DVU0423 0.55 +0.1 478,752 + DVU0423 0.55 -1.2 478,798 - DVU0423 0.66 +0.4 478,878 + DVU0423 0.85 -0.1 478,886 - DVU0423 0.86 -0.4 479,006 + -0.0 479,006 + -0.5 479,014 - +0.5 479,021 + +0.3 479,029 - +0.6 479,029 - +0.1 479,067 + -0.1 479,075 - -0.0 479,075 - -0.1 479,107 + -0.2 479,112 + -0.6 479,112 + -0.8 479,202 + -0.1 479,210 - -0.2 479,232 - +0.8 479,444 - cls DVU0424 0.24 -1.9 479,455 + cls DVU0424 0.25 -0.5 479,455 + cls DVU0424 0.25 -1.1 479,455 + cls DVU0424 0.25 -0.0 479,455 + cls DVU0424 0.25 -0.3 479,463 - cls DVU0424 0.25 +0.1 479,463 - cls DVU0424 0.25 -0.7 479,463 - cls DVU0424 0.25 -0.2 479,463 - cls DVU0424 0.25 -0.8 479,476 + cls DVU0424 0.26 -0.9 479,525 + cls DVU0424 0.30 -0.1 479,525 + cls DVU0424 0.30 -0.7 479,531 - cls DVU0424 0.30 -1.1 479,554 + cls DVU0424 0.32 -0.5 479,692 - cls DVU0424 0.41 -0.5 479,790 + cls DVU0424 0.48 +0.0 479,843 + cls DVU0424 0.52 -0.9 479,870 - cls DVU0424 0.54 -0.4 479,892 - cls DVU0424 0.55 -0.4 479,924 - cls DVU0424 0.57 -0.4 479,929 + cls DVU0424 0.58 -1.4 479,976 + cls DVU0424 0.61 -1.4 479,977 + cls DVU0424 0.61 -1.4 480,003 + cls DVU0424 0.63 -0.4 480,003 + cls DVU0424 0.63 +1.4 480,003 + cls DVU0424 0.63 -0.4 480,003 + cls DVU0424 0.63 -0.0 480,011 - cls DVU0424 0.63 -0.3 480,011 - cls DVU0424 0.63 -2.7 480,011 - cls DVU0424 0.63 -0.0 480,011 - cls DVU0424 0.63 +1.3 480,121 - cls DVU0424 0.71 -1.0 480,170 - cls DVU0424 0.74 -1.3 480,224 - cls DVU0424 0.78 -0.7 480,242 + cls DVU0424 0.79 -0.9 480,357 + cls DVU0424 0.87 -0.7 480,397 - -0.5 480,499 + -0.7 480,499 + -0.6 480,507 - -1.2 480,514 + +0.2 480,522 - +0.1 480,530 + -0.6 480,537 + -0.7 480,587 - -0.4 480,587 - -0.1 480,605 + +0.1 480,656 - -1.6 480,671 - +1.0 480,698 + +0.9 480,706 - -0.2 480,770 - -0.6 480,770 - +0.0 480,788 + -0.1 480,950 + DVU0425 0.17 -0.3 481,036 + DVU0425 0.28 -0.6 481,084 - DVU0425 0.34 +0.7 481,118 + DVU0425 0.38 -1.0 481,126 - DVU0425 0.39 -0.6 481,161 - DVU0425 0.43 +0.1 481,173 + DVU0425 0.45 -0.4 481,187 + DVU0425 0.47 +0.4 481,207 - DVU0425 0.49 +0.1 481,226 - DVU0425 0.52 -0.4 481,240 - DVU0425 0.53 +0.2 481,344 - DVU0425 0.66 +0.2 481,365 - DVU0425 0.69 +0.3 481,417 - DVU0425 0.75 +0.1 481,421 + DVU0425 0.76 -0.0 481,469 + DVU0425 0.82 -0.5 481,496 - DVU0425 0.85 -1.3 481,525 - DVU0425 0.89 -0.5
Or see this region's nucleotide sequence