Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0198

Experiment: MoLS4 without vitamins with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0197 and DVU0198 overlap by 17 nucleotidesDVU0198 and DVU0199 are separated by 9 nucleotidesDVU0199 and DVU0200 are separated by 11 nucleotides DVU0197: DVU0197 - phage portal protein, lambda family (TIGR), at 242,590 to 244,290 DVU0197 DVU0198: DVU0198 - minor capsid protein C, degenerate (TIGR), at 244,274 to 245,593 DVU0198 DVU0199: DVU0199 - conserved hypothetical protein (TIGR), at 245,603 to 245,986 DVU0199 DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002 DVU0200 Position (kb) 244 245 246Strain fitness (log2 ratio) -1 0 1at 243.396 kb on + strand, within DVU0197at 243.399 kb on - strand, within DVU0197at 243.399 kb on - strand, within DVU0197at 243.407 kb on + strand, within DVU0197at 243.931 kb on - strand, within DVU0197at 243.962 kb on - strand, within DVU0197at 244.162 kb on + strandat 244.225 kb on - strandat 244.264 kb on - strandat 244.349 kb on + strandat 244.349 kb on + strandat 244.485 kb on - strand, within DVU0198at 244.568 kb on + strand, within DVU0198at 244.885 kb on + strand, within DVU0198at 245.056 kb on + strand, within DVU0198at 245.056 kb on + strand, within DVU0198at 245.086 kb on - strand, within DVU0198at 246.527 kb on - strand, within DVU0200

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2%
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243,396 + DVU0197 0.47 +0.9
243,399 - DVU0197 0.48 -0.4
243,399 - DVU0197 0.48 -0.5
243,407 + DVU0197 0.48 -0.3
243,931 - DVU0197 0.79 +0.8
243,962 - DVU0197 0.81 -0.3
244,162 + +0.7
244,225 - -0.5
244,264 - +0.4
244,349 + +1.2
244,349 + +1.0
244,485 - DVU0198 0.16 +0.5
244,568 + DVU0198 0.22 +0.2
244,885 + DVU0198 0.46 +0.3
245,056 + DVU0198 0.59 +0.6
245,056 + DVU0198 0.59 +0.2
245,086 - DVU0198 0.62 +0.5
246,527 - DVU0200 0.53 +0.3

Or see this region's nucleotide sequence