Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0135 and DVU0136 are separated by 164 nucleotides DVU0136 and DVU0138 are separated by 229 nucleotides DVU0138 and cckA are separated by 305 nucleotides
DVU0135: DVU0135 - conserved hypothetical protein (TIGR), at 171,562 to 172,473
DVU0135
DVU0136: DVU0136 - hypothetical protein (TIGR), at 172,638 to 172,856
DVU0136
DVU0138: DVU0138 - response regulator (TIGR), at 173,086 to 173,466
DVU0138
DVU0139: cckA - sensor histidine kinase (TIGR), at 173,772 to 175,484
cckA
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.685 kb on + strand, within DVU0135 at 171.685 kb on + strand, within DVU0135 at 171.718 kb on - strand, within DVU0135 at 171.751 kb on - strand, within DVU0135 at 171.887 kb on + strand, within DVU0135 at 171.887 kb on + strand, within DVU0135 at 171.945 kb on + strand, within DVU0135 at 171.964 kb on - strand, within DVU0135 at 171.968 kb on + strand, within DVU0135 at 171.992 kb on - strand, within DVU0135 at 172.098 kb on - strand, within DVU0135 at 172.098 kb on - strand, within DVU0135 at 172.099 kb on + strand, within DVU0135 at 172.099 kb on + strand, within DVU0135 at 172.183 kb on + strand, within DVU0135 at 172.269 kb on - strand, within DVU0135 at 172.408 kb on + strand at 172.413 kb on + strand at 172.527 kb on - strand at 172.575 kb on + strand at 172.602 kb on - strand at 172.613 kb on + strand at 172.613 kb on + strand at 172.675 kb on + strand, within DVU0136 at 172.688 kb on - strand, within DVU0136 at 172.699 kb on + strand, within DVU0136 at 172.765 kb on + strand, within DVU0136 at 172.767 kb on + strand, within DVU0136 at 172.785 kb on - strand, within DVU0136 at 172.808 kb on - strand, within DVU0136 at 172.811 kb on - strand, within DVU0136 at 172.841 kb on - strand at 172.848 kb on - strand at 172.848 kb on - strand at 172.930 kb on - strand at 172.932 kb on - strand at 172.958 kb on + strand at 173.006 kb on + strand at 173.006 kb on + strand at 173.044 kb on + strand at 173.054 kb on - strand at 173.137 kb on - strand, within DVU0138 at 173.149 kb on + strand, within DVU0138 at 173.253 kb on + strand, within DVU0138 at 173.258 kb on + strand, within DVU0138 at 173.335 kb on + strand, within DVU0138 at 173.379 kb on + strand, within DVU0138 at 173.379 kb on + strand, within DVU0138 at 173.387 kb on - strand, within DVU0138 at 173.387 kb on - strand, within DVU0138 at 173.417 kb on + strand, within DVU0138 at 173.452 kb on - strand at 173.478 kb on + strand at 173.483 kb on + strand at 173.486 kb on - strand at 173.501 kb on - strand at 173.503 kb on - strand at 173.542 kb on - strand at 173.589 kb on + strand at 173.628 kb on - strand at 173.673 kb on + strand at 173.681 kb on - strand at 173.721 kb on - strand at 173.727 kb on + strand at 173.737 kb on + strand at 173.769 kb on + strand at 173.785 kb on - strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.814 kb on + strand at 173.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 171,685 + DVU0135 0.13 -0.2 171,685 + DVU0135 0.13 -0.0 171,718 - DVU0135 0.17 -0.2 171,751 - DVU0135 0.21 +0.2 171,887 + DVU0135 0.36 +0.2 171,887 + DVU0135 0.36 +0.6 171,945 + DVU0135 0.42 +0.0 171,964 - DVU0135 0.44 -0.2 171,968 + DVU0135 0.45 -0.4 171,992 - DVU0135 0.47 -0.4 172,098 - DVU0135 0.59 -0.5 172,098 - DVU0135 0.59 +0.1 172,099 + DVU0135 0.59 +0.5 172,099 + DVU0135 0.59 -0.1 172,183 + DVU0135 0.68 -0.8 172,269 - DVU0135 0.78 +0.2 172,408 + -0.1 172,413 + +0.4 172,527 - -0.3 172,575 + -1.6 172,602 - +1.2 172,613 + -1.4 172,613 + -0.1 172,675 + DVU0136 0.17 -0.2 172,688 - DVU0136 0.23 +0.2 172,699 + DVU0136 0.28 -0.4 172,765 + DVU0136 0.58 +0.7 172,767 + DVU0136 0.59 -0.3 172,785 - DVU0136 0.67 +0.0 172,808 - DVU0136 0.78 +1.7 172,811 - DVU0136 0.79 +0.4 172,841 - -0.3 172,848 - +0.2 172,848 - +0.1 172,930 - -0.4 172,932 - -0.8 172,958 + -0.0 173,006 + +1.8 173,006 + -0.0 173,044 + -0.3 173,054 - -0.0 173,137 - DVU0138 0.13 -1.0 173,149 + DVU0138 0.17 -0.2 173,253 + DVU0138 0.44 -0.4 173,258 + DVU0138 0.45 +0.1 173,335 + DVU0138 0.65 -0.3 173,379 + DVU0138 0.77 +0.3 173,379 + DVU0138 0.77 -2.0 173,387 - DVU0138 0.79 -0.7 173,387 - DVU0138 0.79 -0.6 173,417 + DVU0138 0.87 -0.0 173,452 - -0.3 173,478 + -0.0 173,483 + -0.0 173,486 - +0.6 173,501 - +0.4 173,503 - +0.2 173,542 - -0.4 173,589 + -0.4 173,628 - +0.7 173,673 + -0.2 173,681 - -0.2 173,721 - -0.6 173,727 + -0.5 173,737 + -0.5 173,769 + +0.0 173,785 - -0.4 173,814 + -1.6 173,814 + -1.1 173,814 + -0.2 173,814 + -0.0 173,822 - +1.0
Or see this region's nucleotide sequence