Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3170

Experiment: MoLS4 without vitamins with Casaminos 0.2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoLS4 without vitamins with Casaminos 0.2%
3,325,821	+	cbiG	DVU3169	0.44	+0.3
3,325,821	+	cbiG	DVU3169	0.44	-0.7
3,325,824	-	cbiG	DVU3169	0.44	-2.0
3,325,892	+	cbiG	DVU3169	0.50	+1.6
3,325,892	+	cbiG	DVU3169	0.50	-0.1
3,325,892	+	cbiG	DVU3169	0.50	-0.3
3,325,900	-	cbiG	DVU3169	0.50	-1.0
3,325,905	-	cbiG	DVU3169	0.51	-0.4
3,325,915	-	cbiG	DVU3169	0.52	-0.2
3,325,978	+	cbiG	DVU3169	0.57	-0.1
3,325,984	-	cbiG	DVU3169	0.57	-0.6
3,325,997	+	cbiG	DVU3169	0.58	+0.9
3,326,002	+	cbiG	DVU3169	0.59	-0.4
3,326,039	+	cbiG	DVU3169	0.62	-0.4
3,326,125	-	cbiG	DVU3169	0.69	-1.0
3,326,194	+	cbiG	DVU3169	0.75	-1.1
3,326,245	+	cbiG	DVU3169	0.79	-0.2
3,326,259	+	cbiG	DVU3169	0.80	-0.9
3,326,349	-	cbiG	DVU3169	0.88	-0.1
3,326,379	-				-1.3
3,326,416	-				+0.9
3,326,435	-				-0.8
3,326,457	-				-2.4
3,326,475	+				-0.0
3,326,480	+				+0.3
3,326,480	+				-1.0
3,326,483	-				-0.1
3,326,494	+				-0.6
3,326,509	+				+0.4
3,326,519	+				-0.0
3,326,522	-				-0.4
3,326,542	-				+0.1
3,326,575	+				+0.3
3,326,615	-				-0.3
3,326,621	+				-0.4
3,326,630	+				-1.0
3,326,635	+				+0.2
3,326,679	+				-0.2
3,326,713	+				+0.6
3,326,719	+				+0.2
3,326,721	-				+0.1
3,326,721	-				+0.2
3,326,721	-				-0.6
3,326,721	-				-0.3
3,326,723	+				+0.7
3,326,727	-				+0.6
3,326,738	-				+0.7
3,326,748	-				-1.2
3,326,761	+				+0.4
3,326,798	-				-0.2
3,326,831	-				-0.0
3,326,875	-	cobJ	DVU3170	0.10	-0.1
3,326,989	+	cobJ	DVU3170	0.24	-1.5
3,326,989	+	cobJ	DVU3170	0.24	-0.4
3,326,997	-	cobJ	DVU3170	0.25	+1.2
3,327,022	+	cobJ	DVU3170	0.27	-0.7
3,327,032	-	cobJ	DVU3170	0.29	-0.8
3,327,040	-	cobJ	DVU3170	0.30	-1.5
3,327,051	+	cobJ	DVU3170	0.31	-1.4
3,327,079	+	cobJ	DVU3170	0.34	-1.5
3,327,087	+	cobJ	DVU3170	0.35	-0.4
3,327,121	-	cobJ	DVU3170	0.39	-0.5
3,327,162	+	cobJ	DVU3170	0.44	-0.9
3,327,250	-	cobJ	DVU3170	0.54	-0.1
3,327,265	+	cobJ	DVU3170	0.56	+0.1
3,327,326	-	cobJ	DVU3170	0.63	-0.4
3,327,367	+	cobJ	DVU3170	0.68	-0.1
3,327,428	+	cobJ	DVU3170	0.75	-1.1
3,327,434	+	cobJ	DVU3170	0.76	-0.7
3,327,434	+	cobJ	DVU3170	0.76	-1.3
3,327,441	-	cobJ	DVU3170	0.76	-0.7
3,327,442	-	cobJ	DVU3170	0.77	-0.4
3,327,443	-	cobJ	DVU3170	0.77	-0.9
3,327,511	+	cobJ	DVU3170	0.85	-1.0
3,327,519	-	cobJ	DVU3170	0.86	-0.6
3,327,658	-				-0.6
3,327,660	+				+0.4
3,327,662	+				-0.9
3,327,668	-				-0.6
3,327,804	-				-0.1
3,327,877	-				-1.3
3,328,318	+				+0.4
3,328,318	+				-0.3
3,328,489	+				+0.2
3,328,489	+				-0.8
3,328,497	-				-0.3