Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2869 and DVU2870 are separated by 11 nucleotides DVU2870 and DVU2871 are separated by 9 nucleotides DVU2871 and DVU2872 overlap by 17 nucleotides
DVU2869: DVU2869 - major head protein (TIGR), at 2,963,910 to 2,964,914
DVU2869
DVU2870: DVU2870 - conserved hypothetical protein (TIGR), at 2,964,926 to 2,965,309
DVU2870
DVU2871: DVU2871 - minor capsid protein C (TIGR), at 2,965,319 to 2,966,638
DVU2871
DVU2872: DVU2872 - phage portal protein, lambda family (TIGR), at 2,966,622 to 2,968,322
DVU2872
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-1
0
1 at 2964.385 kb on + strand, within DVU2869 at 2965.486 kb on - strand, within DVU2871 at 2965.493 kb on - strand, within DVU2871 at 2965.826 kb on + strand, within DVU2871 at 2966.004 kb on + strand, within DVU2871 at 2966.165 kb on + strand, within DVU2871 at 2966.198 kb on - strand, within DVU2871 at 2966.198 kb on - strand, within DVU2871 at 2966.198 kb on - strand, within DVU2871 at 2966.198 kb on - strand, within DVU2871 at 2966.517 kb on + strand at 2966.526 kb on + strand at 2966.542 kb on - strand at 2966.950 kb on + strand, within DVU2872 at 2967.007 kb on - strand, within DVU2872 at 2967.477 kb on - strand, within DVU2872 at 2967.505 kb on - strand, within DVU2872 at 2967.516 kb on - strand, within DVU2872 at 2967.547 kb on - strand, within DVU2872 at 2967.567 kb on - strand, within DVU2872
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 2,964,385 + DVU2869 0.47 -0.7 2,965,486 - DVU2871 0.13 +0.3 2,965,493 - DVU2871 0.13 +0.1 2,965,826 + DVU2871 0.38 +0.5 2,966,004 + DVU2871 0.52 +0.4 2,966,165 + DVU2871 0.64 +0.4 2,966,198 - DVU2871 0.67 +1.0 2,966,198 - DVU2871 0.67 -0.4 2,966,198 - DVU2871 0.67 +0.2 2,966,198 - DVU2871 0.67 +0.2 2,966,517 + +0.3 2,966,526 + -0.2 2,966,542 - +0.3 2,966,950 + DVU2872 0.19 -0.5 2,967,007 - DVU2872 0.23 +0.2 2,967,477 - DVU2872 0.50 +0.1 2,967,505 - DVU2872 0.52 +0.4 2,967,516 - DVU2872 0.53 +0.6 2,967,547 - DVU2872 0.54 +0.0 2,967,567 - DVU2872 0.56 +0.4
Or see this region's nucleotide sequence