Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2448
Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 without vitamins with Casaminos 0.2% |
---|---|---|---|---|---|
remove | |||||
2,551,334 | - | panB | DVU2446 | 0.89 | -0.3 |
2,551,533 | + | -0.2 | |||
2,551,572 | + | -0.0 | |||
2,551,572 | + | +0.0 | |||
2,551,572 | + | -0.5 | |||
2,551,580 | - | -1.5 | |||
2,551,584 | - | +0.1 | |||
2,551,730 | - | DVU2447 | 0.30 | +0.1 | |
2,551,732 | - | DVU2447 | 0.31 | -0.1 | |
2,551,782 | + | DVU2447 | 0.39 | +0.4 | |
2,551,813 | - | DVU2447 | 0.45 | -1.6 | |
2,551,875 | - | DVU2447 | 0.56 | -0.4 | |
2,551,921 | + | DVU2447 | 0.64 | -1.7 | |
2,551,929 | - | DVU2447 | 0.65 | +0.1 | |
2,551,983 | - | DVU2447 | 0.74 | -1.0 | |
2,552,012 | - | DVU2447 | 0.79 | +0.4 | |
2,552,051 | - | DVU2447 | 0.86 | -0.6 | |
2,552,077 | - | -1.1 | |||
2,552,090 | + | -0.4 | |||
2,552,095 | + | -0.0 | |||
2,552,150 | + | -1.2 | |||
2,552,169 | + | +0.1 | |||
2,552,205 | - | -0.9 | |||
2,552,207 | + | +0.0 | |||
2,552,215 | - | -0.1 | |||
2,552,222 | - | -0.3 | |||
2,552,222 | - | -0.2 | |||
2,552,241 | - | -0.9 | |||
2,552,243 | - | -0.4 | |||
2,552,243 | - | -1.7 | |||
2,552,243 | - | -0.4 | |||
2,552,253 | - | +0.2 | |||
2,552,408 | + | panC | DVU2448 | 0.12 | -1.7 |
2,552,416 | - | panC | DVU2448 | 0.13 | -2.7 |
2,552,416 | - | panC | DVU2448 | 0.13 | -1.4 |
2,552,416 | - | panC | DVU2448 | 0.13 | -0.3 |
2,552,416 | - | panC | DVU2448 | 0.13 | -1.6 |
2,552,431 | + | panC | DVU2448 | 0.15 | -1.5 |
2,552,434 | - | panC | DVU2448 | 0.15 | -1.2 |
2,552,596 | + | panC | DVU2448 | 0.34 | -1.7 |
2,552,669 | + | panC | DVU2448 | 0.43 | -1.6 |
2,552,674 | + | panC | DVU2448 | 0.44 | -1.4 |
2,552,674 | + | panC | DVU2448 | 0.44 | -2.7 |
2,552,682 | - | panC | DVU2448 | 0.44 | -2.6 |
2,552,682 | - | panC | DVU2448 | 0.44 | -1.4 |
2,552,682 | - | panC | DVU2448 | 0.44 | -1.5 |
2,552,683 | + | panC | DVU2448 | 0.45 | -1.9 |
2,552,691 | - | panC | DVU2448 | 0.46 | -1.4 |
2,552,691 | - | panC | DVU2448 | 0.46 | -1.8 |
2,552,865 | + | panC | DVU2448 | 0.66 | -1.9 |
2,552,873 | - | panC | DVU2448 | 0.67 | -2.3 |
2,552,874 | - | panC | DVU2448 | 0.67 | -0.4 |
2,552,942 | - | panC | DVU2448 | 0.75 | -2.0 |
2,552,952 | - | panC | DVU2448 | 0.76 | -1.6 |
2,553,025 | - | panC | DVU2448 | 0.85 | -1.1 |
2,553,039 | - | panC | DVU2448 | 0.86 | -2.5 |
2,553,051 | + | panC | DVU2448 | 0.88 | -2.0 |
2,553,051 | + | panC | DVU2448 | 0.88 | -1.8 |
2,553,078 | + | -0.5 |
Or see this region's nucleotide sequence