Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oorA and oorB are separated by 7 nucleotides oorB and oorC overlap by 4 nucleotides oorC and DVU1948 are separated by 10 nucleotides
DVU1945: oorA - pyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR), at 2,017,911 to 2,019,059
oorA
DVU1946: oorB - pyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR), at 2,019,067 to 2,019,897
oorB
DVU1947: oorC - pyruvate ferredoxin oxidoreductase, gamma subunit, putative (TIGR), at 2,019,894 to 2,020,517
oorC
DVU1948: DVU1948 - conserved hypothetical protein (TIGR), at 2,020,528 to 2,020,818
DVU1948
Position (kb)
2019
2020 Strain fitness (log2 ratio)
-1
0
1 at 2018.140 kb on + strand, within oorA at 2018.212 kb on - strand, within oorA at 2018.222 kb on + strand, within oorA at 2018.251 kb on - strand, within oorA at 2018.287 kb on + strand, within oorA at 2018.287 kb on + strand, within oorA at 2018.295 kb on - strand, within oorA at 2018.295 kb on - strand, within oorA at 2018.300 kb on - strand, within oorA at 2018.300 kb on - strand, within oorA at 2018.407 kb on + strand, within oorA at 2018.521 kb on + strand, within oorA at 2018.521 kb on + strand, within oorA at 2018.521 kb on + strand, within oorA at 2018.529 kb on - strand, within oorA at 2018.719 kb on - strand, within oorA at 2018.719 kb on - strand, within oorA at 2018.722 kb on + strand, within oorA at 2018.748 kb on - strand, within oorA at 2018.775 kb on + strand, within oorA at 2018.919 kb on - strand, within oorA at 2018.951 kb on - strand at 2018.956 kb on - strand at 2019.023 kb on + strand at 2019.172 kb on - strand, within oorB at 2019.211 kb on - strand, within oorB at 2019.272 kb on - strand, within oorB at 2019.279 kb on + strand, within oorB at 2019.288 kb on + strand, within oorB at 2019.295 kb on + strand, within oorB at 2019.303 kb on - strand, within oorB at 2019.344 kb on - strand, within oorB at 2019.411 kb on + strand, within oorB at 2019.422 kb on - strand, within oorB at 2019.424 kb on - strand, within oorB at 2019.505 kb on + strand, within oorB at 2019.537 kb on - strand, within oorB at 2019.672 kb on + strand, within oorB at 2019.683 kb on + strand, within oorB at 2019.765 kb on - strand, within oorB at 2019.925 kb on + strand at 2019.949 kb on + strand at 2020.089 kb on - strand, within oorC at 2020.098 kb on - strand, within oorC at 2020.164 kb on + strand, within oorC at 2020.301 kb on + strand, within oorC at 2020.596 kb on + strand, within DVU1948 at 2020.596 kb on + strand, within DVU1948 at 2020.696 kb on + strand, within DVU1948 at 2020.752 kb on + strand, within DVU1948 at 2020.787 kb on + strand, within DVU1948 at 2020.789 kb on + strand, within DVU1948 at 2020.795 kb on - strand at 2020.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 2,018,140 + oorA DVU1945 0.20 -1.0 2,018,212 - oorA DVU1945 0.26 -1.0 2,018,222 + oorA DVU1945 0.27 +0.8 2,018,251 - oorA DVU1945 0.30 +0.3 2,018,287 + oorA DVU1945 0.33 +0.5 2,018,287 + oorA DVU1945 0.33 -0.5 2,018,295 - oorA DVU1945 0.33 -0.0 2,018,295 - oorA DVU1945 0.33 +0.8 2,018,300 - oorA DVU1945 0.34 +0.1 2,018,300 - oorA DVU1945 0.34 +0.0 2,018,407 + oorA DVU1945 0.43 +0.2 2,018,521 + oorA DVU1945 0.53 -0.7 2,018,521 + oorA DVU1945 0.53 +0.1 2,018,521 + oorA DVU1945 0.53 -0.0 2,018,529 - oorA DVU1945 0.54 +0.3 2,018,719 - oorA DVU1945 0.70 +0.5 2,018,719 - oorA DVU1945 0.70 +0.1 2,018,722 + oorA DVU1945 0.71 +0.4 2,018,748 - oorA DVU1945 0.73 -1.3 2,018,775 + oorA DVU1945 0.75 +0.5 2,018,919 - oorA DVU1945 0.88 -1.1 2,018,951 - +0.1 2,018,956 - +0.7 2,019,023 + -1.0 2,019,172 - oorB DVU1946 0.13 +0.3 2,019,211 - oorB DVU1946 0.17 +0.2 2,019,272 - oorB DVU1946 0.25 -0.6 2,019,279 + oorB DVU1946 0.26 +0.4 2,019,288 + oorB DVU1946 0.27 +0.7 2,019,295 + oorB DVU1946 0.27 +0.2 2,019,303 - oorB DVU1946 0.28 -0.9 2,019,344 - oorB DVU1946 0.33 +0.1 2,019,411 + oorB DVU1946 0.41 +0.1 2,019,422 - oorB DVU1946 0.43 +0.3 2,019,424 - oorB DVU1946 0.43 +0.3 2,019,505 + oorB DVU1946 0.53 -0.8 2,019,537 - oorB DVU1946 0.57 +0.6 2,019,672 + oorB DVU1946 0.73 +0.2 2,019,683 + oorB DVU1946 0.74 +0.3 2,019,765 - oorB DVU1946 0.84 +0.3 2,019,925 + -0.1 2,019,949 + -0.1 2,020,089 - oorC DVU1947 0.31 +0.5 2,020,098 - oorC DVU1947 0.33 +0.0 2,020,164 + oorC DVU1947 0.43 +0.4 2,020,301 + oorC DVU1947 0.65 -0.6 2,020,596 + DVU1948 0.23 -1.2 2,020,596 + DVU1948 0.23 -0.1 2,020,696 + DVU1948 0.58 -0.4 2,020,752 + DVU1948 0.77 -0.1 2,020,787 + DVU1948 0.89 -0.3 2,020,789 + DVU1948 0.90 +0.2 2,020,795 - -0.4 2,020,797 - -0.5
Or see this region's nucleotide sequence