Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt coxB and DVU1813 are separated by 9 nucleotides DVU1813 and DVU1814 are separated by 8 nucleotides DVU1814 and DVU1815 are separated by 10 nucleotides
DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967
coxB
DVU1813: DVU1813 - hypothetical protein (TIGR), at 1,877,977 to 1,878,270
DVU1813
DVU1814: DVU1814 - cytochrome c oxidase, subunit III, putative (TIGR), at 1,878,279 to 1,878,890
DVU1814
DVU1815: DVU1815 - cytochrome c oxidase, subunit I, putative (TIGR), at 1,878,901 to 1,880,526
DVU1815
Position (kb)
1877
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1 at 1877.015 kb on + strand, within coxB at 1877.028 kb on - strand, within coxB at 1877.114 kb on - strand, within coxB at 1877.165 kb on + strand, within coxB at 1877.165 kb on + strand, within coxB at 1877.188 kb on + strand, within coxB at 1877.260 kb on + strand, within coxB at 1877.263 kb on - strand, within coxB at 1877.268 kb on - strand, within coxB at 1877.348 kb on + strand, within coxB at 1877.489 kb on + strand, within coxB at 1877.499 kb on + strand, within coxB at 1877.514 kb on - strand, within coxB at 1877.549 kb on + strand, within coxB at 1877.663 kb on + strand, within coxB at 1877.769 kb on - strand, within coxB at 1877.787 kb on - strand, within coxB at 1877.858 kb on + strand at 1877.866 kb on - strand at 1877.866 kb on - strand at 1877.866 kb on - strand at 1877.983 kb on - strand at 1878.064 kb on + strand, within DVU1813 at 1878.104 kb on - strand, within DVU1813 at 1878.239 kb on - strand, within DVU1813 at 1878.241 kb on - strand at 1878.265 kb on + strand at 1878.523 kb on - strand, within DVU1814 at 1878.671 kb on + strand, within DVU1814 at 1878.711 kb on + strand, within DVU1814 at 1878.717 kb on - strand, within DVU1814 at 1878.717 kb on - strand, within DVU1814 at 1878.859 kb on + strand at 1878.871 kb on - strand at 1878.967 kb on + strand at 1879.133 kb on + strand, within DVU1815 at 1879.141 kb on - strand, within DVU1815 at 1879.141 kb on - strand, within DVU1815 at 1879.153 kb on + strand, within DVU1815 at 1879.162 kb on - strand, within DVU1815
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 1,877,015 + coxB DVU1812 0.26 -0.2 1,877,028 - coxB DVU1812 0.27 +0.1 1,877,114 - coxB DVU1812 0.33 -1.1 1,877,165 + coxB DVU1812 0.37 -2.5 1,877,165 + coxB DVU1812 0.37 -0.2 1,877,188 + coxB DVU1812 0.39 -1.5 1,877,260 + coxB DVU1812 0.45 -0.8 1,877,263 - coxB DVU1812 0.45 -1.1 1,877,268 - coxB DVU1812 0.45 -1.2 1,877,348 + coxB DVU1812 0.52 +0.6 1,877,489 + coxB DVU1812 0.63 -0.8 1,877,499 + coxB DVU1812 0.63 -0.9 1,877,514 - coxB DVU1812 0.65 -0.0 1,877,549 + coxB DVU1812 0.67 +0.6 1,877,663 + coxB DVU1812 0.76 -0.5 1,877,769 - coxB DVU1812 0.84 -0.0 1,877,787 - coxB DVU1812 0.86 -0.0 1,877,858 + -0.2 1,877,866 - -0.2 1,877,866 - -2.5 1,877,866 - +1.0 1,877,983 - +0.1 1,878,064 + DVU1813 0.30 +0.8 1,878,104 - DVU1813 0.43 +0.3 1,878,239 - DVU1813 0.89 -0.2 1,878,241 - -0.0 1,878,265 + -0.1 1,878,523 - DVU1814 0.40 -0.2 1,878,671 + DVU1814 0.64 -1.2 1,878,711 + DVU1814 0.71 -0.2 1,878,717 - DVU1814 0.72 +0.1 1,878,717 - DVU1814 0.72 -0.2 1,878,859 + -0.0 1,878,871 - -2.1 1,878,967 + -0.2 1,879,133 + DVU1815 0.14 +0.8 1,879,141 - DVU1815 0.15 -0.3 1,879,141 - DVU1815 0.15 +0.4 1,879,153 + DVU1815 0.15 +0.2 1,879,162 - DVU1815 0.16 -0.5
Or see this region's nucleotide sequence