Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1750 and DVU1751 are separated by 192 nucleotides DVU1751 and DVU1752 are separated by 380 nucleotides DVU1752 and DVU1753 are separated by 83 nucleotides DVU1753 and DVU1754 overlap by 4 nucleotides
DVU1750: DVU1750 - hypothetical protein (TIGR), at 1,818,336 to 1,819,118
DVU1750
DVU1751: DVU1751 - hypothetical protein (TIGR), at 1,819,311 to 1,819,457
DVU1751
DVU1752: DVU1752 - hypothetical protein (TIGR), at 1,819,838 to 1,820,077
DVU1752
DVU1753: DVU1753 - hypothetical protein (TIGR), at 1,820,161 to 1,820,334
DVU1753
DVU1754: DVU1754 - hypothetical protein (TIGR), at 1,820,331 to 1,820,738
DVU1754
Position (kb)
1819
1820
1821 Strain fitness (log2 ratio)
-1
0
1 at 1818.846 kb on - strand, within DVU1750 at 1818.924 kb on - strand, within DVU1750 at 1818.924 kb on - strand, within DVU1750 at 1819.036 kb on - strand, within DVU1750 at 1819.502 kb on + strand at 1819.618 kb on + strand at 1819.770 kb on + strand at 1819.885 kb on - strand, within DVU1752 at 1819.912 kb on + strand, within DVU1752 at 1819.941 kb on + strand, within DVU1752 at 1819.956 kb on - strand, within DVU1752 at 1820.019 kb on + strand, within DVU1752 at 1820.032 kb on - strand, within DVU1752 at 1820.036 kb on - strand, within DVU1752 at 1820.043 kb on + strand, within DVU1752 at 1820.077 kb on + strand at 1820.192 kb on + strand, within DVU1753 at 1820.192 kb on + strand, within DVU1753 at 1820.200 kb on - strand, within DVU1753 at 1820.200 kb on - strand, within DVU1753 at 1820.294 kb on - strand, within DVU1753 at 1820.345 kb on + strand at 1820.351 kb on - strand at 1820.355 kb on + strand at 1820.382 kb on - strand, within DVU1754 at 1820.394 kb on - strand, within DVU1754 at 1820.427 kb on - strand, within DVU1754 at 1820.478 kb on - strand, within DVU1754 at 1820.699 kb on + strand at 1820.706 kb on + strand at 1820.707 kb on - strand at 1820.714 kb on - strand at 1820.714 kb on - strand at 1820.740 kb on - strand at 1820.759 kb on + strand at 1820.767 kb on - strand at 1820.767 kb on - strand at 1820.767 kb on - strand at 1820.771 kb on + strand at 1820.784 kb on + strand at 1820.803 kb on + strand at 1820.803 kb on + strand at 1820.866 kb on + strand at 1820.928 kb on - strand at 1821.009 kb on + strand at 1821.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 1,818,846 - DVU1750 0.65 -0.9 1,818,924 - DVU1750 0.75 -0.0 1,818,924 - DVU1750 0.75 +0.1 1,819,036 - DVU1750 0.89 -0.3 1,819,502 + -0.8 1,819,618 + -0.7 1,819,770 + -0.0 1,819,885 - DVU1752 0.20 +0.4 1,819,912 + DVU1752 0.31 -0.8 1,819,941 + DVU1752 0.43 -0.3 1,819,956 - DVU1752 0.49 +0.1 1,820,019 + DVU1752 0.75 -0.5 1,820,032 - DVU1752 0.81 -0.8 1,820,036 - DVU1752 0.82 +0.2 1,820,043 + DVU1752 0.85 +0.8 1,820,077 + -0.7 1,820,192 + DVU1753 0.18 +0.3 1,820,192 + DVU1753 0.18 -0.3 1,820,200 - DVU1753 0.22 -1.4 1,820,200 - DVU1753 0.22 -0.4 1,820,294 - DVU1753 0.76 -0.1 1,820,345 + +0.1 1,820,351 - -0.0 1,820,355 + -1.3 1,820,382 - DVU1754 0.12 -0.5 1,820,394 - DVU1754 0.15 -0.1 1,820,427 - DVU1754 0.24 -0.0 1,820,478 - DVU1754 0.36 +0.1 1,820,699 + +0.3 1,820,706 + -0.6 1,820,707 - -0.4 1,820,714 - +0.6 1,820,714 - -0.3 1,820,740 - +0.4 1,820,759 + -0.1 1,820,767 - -0.3 1,820,767 - -1.6 1,820,767 - -1.1 1,820,771 + +0.3 1,820,784 + -0.6 1,820,803 + -0.7 1,820,803 + -0.3 1,820,866 + -0.3 1,820,928 - -0.6 1,821,009 + -0.7 1,821,076 - +0.1
Or see this region's nucleotide sequence