Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1725 and DVU1726 are separated by 135 nucleotides DVU1726 and DVU1727 overlap by 4 nucleotides DVU1727 and DVU1728 overlap by 1 nucleotides DVU1728 and DVU1729 are separated by 270 nucleotides DVU1729 and DVU1730 are separated by 9 nucleotides DVU1730 and DVU1731 are separated by 107 nucleotides
DVU1725: DVU1725 - conserved hypothetical protein (TIGR), at 1,798,920 to 1,799,528
DVU1725
DVU1726: DVU1726 - hypothetical protein (TIGR), at 1,799,664 to 1,799,912
DVU1726
DVU1727: DVU1727 - hypothetical protein (TIGR), at 1,799,909 to 1,800,259
DVU1727
DVU1728: DVU1728 - conserved hypothetical protein (TIGR), at 1,800,259 to 1,800,675
DVU1728
DVU1729: DVU1729 - killer protein, putative (TIGR), at 1,800,946 to 1,801,224
DVU1729
DVU1730: DVU1730 - DNA-binding protein (TIGR), at 1,801,234 to 1,801,539
DVU1730
DVU1731: DVU1731 - hypothetical protein (TIGR), at 1,801,647 to 1,801,817
DVU1731
Position (kb)
1800
1801 Strain fitness (log2 ratio)
-1
0
1 at 1799.274 kb on + strand, within DVU1725 at 1799.287 kb on + strand, within DVU1725 at 1799.397 kb on + strand, within DVU1725 at 1799.433 kb on - strand, within DVU1725 at 1799.524 kb on + strand at 1799.806 kb on - strand, within DVU1726 at 1799.970 kb on - strand, within DVU1727 at 1799.994 kb on + strand, within DVU1727 at 1800.048 kb on - strand, within DVU1727 at 1800.064 kb on + strand, within DVU1727 at 1800.593 kb on - strand, within DVU1728 at 1800.632 kb on + strand, within DVU1728 at 1800.671 kb on + strand at 1800.683 kb on + strand at 1800.683 kb on + strand at 1800.753 kb on + strand at 1800.777 kb on - strand at 1800.801 kb on - strand at 1800.859 kb on - strand at 1800.942 kb on + strand at 1801.033 kb on - strand, within DVU1729 at 1801.055 kb on + strand, within DVU1729 at 1801.108 kb on + strand, within DVU1729 at 1801.132 kb on - strand, within DVU1729 at 1801.545 kb on + strand at 1801.547 kb on + strand at 1801.547 kb on + strand at 1801.566 kb on + strand at 1801.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 1,799,274 + DVU1725 0.58 -0.6 1,799,287 + DVU1725 0.60 -1.5 1,799,397 + DVU1725 0.78 -0.5 1,799,433 - DVU1725 0.84 -0.2 1,799,524 + -0.3 1,799,806 - DVU1726 0.57 -0.2 1,799,970 - DVU1727 0.17 -1.2 1,799,994 + DVU1727 0.24 -0.6 1,800,048 - DVU1727 0.40 +0.7 1,800,064 + DVU1727 0.44 -0.6 1,800,593 - DVU1728 0.80 +0.5 1,800,632 + DVU1728 0.89 -1.6 1,800,671 + -0.1 1,800,683 + -0.7 1,800,683 + +0.5 1,800,753 + -0.0 1,800,777 - +0.5 1,800,801 - -0.4 1,800,859 - -0.3 1,800,942 + -0.9 1,801,033 - DVU1729 0.31 +0.2 1,801,055 + DVU1729 0.39 +0.5 1,801,108 + DVU1729 0.58 -0.3 1,801,132 - DVU1729 0.67 -0.5 1,801,545 + -0.5 1,801,547 + +0.2 1,801,547 + +0.1 1,801,566 + -0.0 1,801,591 - -0.1
Or see this region's nucleotide sequence