Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1581

Experiment: MoLS4 without vitamins with Casaminos 0.2%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysS and rpiB are separated by 16 nucleotidesrpiB and DVU1581 are separated by 13 nucleotidesDVU1581 and DVU1582 are separated by 14 nucleotidesDVU1582 and DVU1583 overlap by 4 nucleotides DVU1579: cysS - cysteinyl-tRNA synthetase (TIGR), at 1,661,372 to 1,662,829 cysS DVU1580: rpiB - ribose 5-phosphate isomerase, putative (TIGR), at 1,662,846 to 1,663,289 rpiB DVU1581: DVU1581 - hypothetical protein (TIGR), at 1,663,303 to 1,663,653 DVU1581 DVU1582: DVU1582 - hypothetical protein (TIGR), at 1,663,668 to 1,664,507 DVU1582 DVU1583: DVU1583 - TPR domain protein (TIGR), at 1,664,504 to 1,666,192 DVU1583 Position (kb) 1663 1664Strain fitness (log2 ratio) -1 0 1at 1663.301 kb on + strandat 1663.309 kb on - strandat 1663.487 kb on + strand, within DVU1581at 1663.515 kb on + strand, within DVU1581at 1663.523 kb on - strand, within DVU1581at 1663.660 kb on - strandat 1663.718 kb on + strandat 1663.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2%
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1,663,301 + -0.0
1,663,309 - -0.9
1,663,487 + DVU1581 0.52 -0.8
1,663,515 + DVU1581 0.60 -0.3
1,663,523 - DVU1581 0.63 -1.5
1,663,660 - -0.2
1,663,718 + +0.6
1,663,726 - -0.0

Or see this region's nucleotide sequence