Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1460

Experiment: MoLS4 without vitamins with Casaminos 0.2%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1459 and DVU1460 are separated by 35 nucleotidesDVU1460 and hemA are separated by 17 nucleotides DVU1459: DVU1459 - conserved domain protein (TIGR), at 1,538,486 to 1,539,658 DVU1459 DVU1460: DVU1460 - hypothetical protein (TIGR), at 1,539,694 to 1,540,029 DVU1460 DVU1461: hemA - glutamyl-tRNA reductase (TIGR), at 1,540,047 to 1,541,369 hemA Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -1 0 1at 1539.758 kb on - strand, within DVU1460at 1539.816 kb on - strand, within DVU1460at 1540.035 kb on - strandat 1540.035 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2%
remove
1,539,758 - DVU1460 0.19 -0.3
1,539,816 - DVU1460 0.36 -0.9
1,540,035 - +0.2
1,540,035 - -0.9

Or see this region's nucleotide sequence