Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fusA and DVU0882 are separated by 205 nucleotides DVU0882 and nrdH are separated by 273 nucleotides nrdH and ftrB overlap by 4 nucleotides
DVU0881: fusA - translation elongation factor G, putative (TIGR), at 971,471 to 973,537
fusA
DVU0882: DVU0882 - hypothetical protein (TIGR), at 973,743 to 974,207
DVU0882
DVU0883: nrdH - glutaredoxin, putative (TIGR), at 974,481 to 974,738
nrdH
DVU0884: ftrB - conserved hypothetical protein (TIGR), at 974,735 to 975,079
ftrB
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1 at 972.758 kb on - strand, within fusA at 972.803 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.810 kb on + strand, within fusA at 972.811 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.818 kb on - strand, within fusA at 972.845 kb on + strand, within fusA at 972.899 kb on + strand, within fusA at 973.023 kb on + strand, within fusA at 973.058 kb on + strand, within fusA at 973.068 kb on + strand, within fusA at 973.179 kb on + strand, within fusA at 973.243 kb on + strand, within fusA at 973.346 kb on - strand at 973.386 kb on - strand at 973.386 kb on - strand at 973.389 kb on + strand at 973.398 kb on - strand at 973.472 kb on + strand at 973.472 kb on + strand at 973.520 kb on + strand at 973.560 kb on - strand at 973.707 kb on - strand at 973.722 kb on + strand at 973.854 kb on + strand, within DVU0882 at 973.892 kb on - strand, within DVU0882 at 973.936 kb on - strand, within DVU0882 at 973.999 kb on + strand, within DVU0882 at 974.000 kb on + strand, within DVU0882 at 974.062 kb on - strand, within DVU0882 at 974.086 kb on + strand, within DVU0882 at 974.091 kb on + strand, within DVU0882 at 974.107 kb on + strand, within DVU0882 at 974.115 kb on - strand, within DVU0882 at 974.117 kb on + strand, within DVU0882 at 974.146 kb on - strand, within DVU0882 at 974.204 kb on - strand at 974.235 kb on - strand at 974.267 kb on + strand at 974.321 kb on - strand at 974.368 kb on + strand at 974.375 kb on + strand at 974.404 kb on - strand at 974.407 kb on + strand at 974.407 kb on + strand at 974.513 kb on + strand, within nrdH at 974.519 kb on - strand, within nrdH at 974.521 kb on - strand, within nrdH at 974.538 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.647 kb on - strand, within nrdH at 974.709 kb on + strand, within nrdH at 974.772 kb on - strand, within ftrB at 974.814 kb on - strand, within ftrB at 974.822 kb on + strand, within ftrB at 974.884 kb on - strand, within ftrB at 974.920 kb on + strand, within ftrB at 974.928 kb on - strand, within ftrB at 974.929 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB at 975.027 kb on - strand, within ftrB
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 972,758 - fusA DVU0881 0.62 -0.0 972,803 + fusA DVU0881 0.64 -1.9 972,810 + fusA DVU0881 0.65 +0.0 972,810 + fusA DVU0881 0.65 -0.3 972,810 + fusA DVU0881 0.65 -0.1 972,811 - fusA DVU0881 0.65 -0.4 972,818 - fusA DVU0881 0.65 +0.4 972,818 - fusA DVU0881 0.65 +0.9 972,818 - fusA DVU0881 0.65 +0.5 972,818 - fusA DVU0881 0.65 -0.2 972,845 + fusA DVU0881 0.66 -0.0 972,899 + fusA DVU0881 0.69 -0.9 973,023 + fusA DVU0881 0.75 +0.1 973,058 + fusA DVU0881 0.77 -0.3 973,068 + fusA DVU0881 0.77 -0.4 973,179 + fusA DVU0881 0.83 +0.5 973,243 + fusA DVU0881 0.86 -0.2 973,346 - -0.3 973,386 - -1.7 973,386 - +0.1 973,389 + -0.5 973,398 - +0.2 973,472 + +0.2 973,472 + -0.2 973,520 + +0.9 973,560 - -0.7 973,707 - -0.1 973,722 + -1.9 973,854 + DVU0882 0.24 -0.7 973,892 - DVU0882 0.32 +0.4 973,936 - DVU0882 0.42 -0.1 973,999 + DVU0882 0.55 +0.5 974,000 + DVU0882 0.55 -0.2 974,062 - DVU0882 0.69 +0.2 974,086 + DVU0882 0.74 +0.2 974,091 + DVU0882 0.75 +0.6 974,107 + DVU0882 0.78 +0.0 974,115 - DVU0882 0.80 +0.4 974,117 + DVU0882 0.80 +0.1 974,146 - DVU0882 0.87 -0.6 974,204 - +0.4 974,235 - -2.2 974,267 + +0.0 974,321 - +0.8 974,368 + -1.0 974,375 + -0.2 974,404 - -0.4 974,407 + -1.8 974,407 + -0.1 974,513 + nrdH DVU0883 0.12 +0.2 974,519 - nrdH DVU0883 0.15 -1.2 974,521 - nrdH DVU0883 0.16 -0.3 974,538 - nrdH DVU0883 0.22 -0.5 974,647 - nrdH DVU0883 0.64 -0.1 974,647 - nrdH DVU0883 0.64 -0.2 974,709 + nrdH DVU0883 0.88 -0.4 974,772 - ftrB DVU0884 0.11 +0.4 974,814 - ftrB DVU0884 0.23 -0.2 974,822 + ftrB DVU0884 0.25 -0.6 974,884 - ftrB DVU0884 0.43 -1.5 974,920 + ftrB DVU0884 0.54 -0.4 974,928 - ftrB DVU0884 0.56 +0.7 974,929 - ftrB DVU0884 0.56 -0.1 975,027 - ftrB DVU0884 0.85 -0.1 975,027 - ftrB DVU0884 0.85 -0.8
Or see this region's nucleotide sequence