Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt secA and DVU0826 are separated by 162 nucleotides DVU0826 and DVU0827 are separated by 147 nucleotides
DVU0825: secA - preprotein translocase, SecA subunit (TIGR), at 913,045 to 915,546
secA
DVU0826: DVU0826 - glycolate oxidase, iron-sulfur subunit, putative (TIGR), at 915,709 to 917,031
DVU0826
DVU0827: DVU0827 - glycolate oxidase, subunit GlcD, putative (TIGR), at 917,179 to 918,594
DVU0827
Position (kb) 915
916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 915.560 kb on - strand at 915.696 kb on - strand at 915.777 kb on - strand at 915.875 kb on + strand, within DVU0826 at 915.894 kb on + strand, within DVU0826 at 915.896 kb on + strand, within DVU0826 at 916.002 kb on - strand, within DVU0826 at 916.264 kb on + strand, within DVU0826 at 916.276 kb on - strand, within DVU0826 at 916.329 kb on + strand, within DVU0826 at 916.362 kb on + strand, within DVU0826 at 916.362 kb on + strand, within DVU0826 at 916.416 kb on - strand, within DVU0826 at 916.416 kb on - strand, within DVU0826 at 916.503 kb on + strand, within DVU0826 at 916.525 kb on - strand, within DVU0826 at 916.543 kb on + strand, within DVU0826 at 916.697 kb on - strand, within DVU0826 at 916.700 kb on + strand, within DVU0826 at 916.719 kb on + strand, within DVU0826 at 916.719 kb on + strand, within DVU0826 at 916.719 kb on + strand, within DVU0826 at 916.901 kb on - strand at 916.959 kb on + strand at 917.019 kb on + strand at 917.034 kb on + strand at 917.048 kb on - strand at 917.066 kb on - strand at 917.222 kb on - strand at 917.225 kb on + strand at 917.225 kb on + strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.233 kb on - strand at 917.238 kb on - strand at 917.285 kb on + strand at 917.290 kb on + strand at 917.293 kb on - strand at 917.305 kb on + strand at 917.351 kb on + strand, within DVU0827 at 917.358 kb on - strand, within DVU0827 at 917.465 kb on - strand, within DVU0827 at 917.601 kb on - strand, within DVU0827 at 917.675 kb on - strand, within DVU0827 at 917.717 kb on - strand, within DVU0827 at 917.749 kb on - strand, within DVU0827 at 917.779 kb on + strand, within DVU0827 at 917.779 kb on + strand, within DVU0827 at 917.787 kb on - strand, within DVU0827 at 917.787 kb on - strand, within DVU0827 at 917.859 kb on - strand, within DVU0827 at 917.859 kb on - strand, within DVU0827 at 917.900 kb on + strand, within DVU0827 at 917.906 kb on + strand, within DVU0827 at 917.952 kb on - strand, within DVU0827
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 915,560 - -0.1 915,696 - -0.1 915,777 - -0.2 915,875 + DVU0826 0.13 -0.7 915,894 + DVU0826 0.14 -0.8 915,896 + DVU0826 0.14 -1.1 916,002 - DVU0826 0.22 -0.3 916,264 + DVU0826 0.42 -1.6 916,276 - DVU0826 0.43 -0.8 916,329 + DVU0826 0.47 -0.8 916,362 + DVU0826 0.49 -0.3 916,362 + DVU0826 0.49 -0.2 916,416 - DVU0826 0.53 -0.8 916,416 - DVU0826 0.53 -1.6 916,503 + DVU0826 0.60 -0.6 916,525 - DVU0826 0.62 -0.6 916,543 + DVU0826 0.63 -0.7 916,697 - DVU0826 0.75 +1.3 916,700 + DVU0826 0.75 -0.3 916,719 + DVU0826 0.76 -0.4 916,719 + DVU0826 0.76 -0.8 916,719 + DVU0826 0.76 -0.9 916,901 - -1.5 916,959 + -0.6 917,019 + -1.2 917,034 + -0.1 917,048 - +0.4 917,066 - -0.3 917,222 - -1.0 917,225 + -0.8 917,225 + -1.0 917,233 - -0.6 917,233 - -0.1 917,233 - -1.1 917,233 - -1.0 917,233 - -2.8 917,233 - -1.1 917,233 - -1.1 917,238 - -1.0 917,285 + -0.6 917,290 + -0.4 917,293 - -0.8 917,305 + -0.9 917,351 + DVU0827 0.12 -0.4 917,358 - DVU0827 0.13 -1.0 917,465 - DVU0827 0.20 -1.8 917,601 - DVU0827 0.30 -1.3 917,675 - DVU0827 0.35 -0.5 917,717 - DVU0827 0.38 -0.6 917,749 - DVU0827 0.40 +0.2 917,779 + DVU0827 0.42 -0.5 917,779 + DVU0827 0.42 -1.4 917,787 - DVU0827 0.43 -0.9 917,787 - DVU0827 0.43 -1.3 917,859 - DVU0827 0.48 -0.6 917,859 - DVU0827 0.48 -3.3 917,900 + DVU0827 0.51 -1.6 917,906 + DVU0827 0.51 -1.0 917,952 - DVU0827 0.55 -0.8
Or see this region's nucleotide sequence