Experiment: MoLS4 without vitamins with Casaminos 0.2%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artQ and DVU0677 are separated by 281 nucleotides DVU0677 and luxO are separated by 353 nucleotides
DVU0676: artQ - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 748,069 to 748,956
artQ
DVU0677: DVU0677 - transglycosylase domain protein (TIGR), at 749,238 to 750,287
DVU0677
DVU0679: luxO - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 750,641 to 752,107
luxO
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1 at 748.272 kb on + strand, within artQ at 748.295 kb on - strand, within artQ at 748.306 kb on - strand, within artQ at 748.510 kb on - strand, within artQ at 748.551 kb on + strand, within artQ at 748.598 kb on - strand, within artQ at 748.695 kb on - strand, within artQ at 748.758 kb on - strand, within artQ at 748.791 kb on + strand, within artQ at 748.854 kb on - strand, within artQ at 748.889 kb on - strand at 748.889 kb on - strand at 748.925 kb on + strand at 749.073 kb on + strand at 749.106 kb on + strand at 749.119 kb on - strand at 749.145 kb on + strand at 749.153 kb on - strand at 749.178 kb on + strand at 749.181 kb on - strand at 749.186 kb on - strand at 749.192 kb on - strand at 749.202 kb on - strand at 749.254 kb on - strand at 749.261 kb on + strand at 749.261 kb on + strand at 749.274 kb on - strand at 749.278 kb on + strand at 749.344 kb on - strand, within DVU0677 at 749.408 kb on + strand, within DVU0677 at 749.428 kb on - strand, within DVU0677 at 749.564 kb on + strand, within DVU0677 at 749.749 kb on + strand, within DVU0677 at 749.749 kb on + strand, within DVU0677 at 749.778 kb on - strand, within DVU0677 at 749.812 kb on - strand, within DVU0677 at 749.821 kb on + strand, within DVU0677 at 749.865 kb on - strand, within DVU0677 at 749.909 kb on + strand, within DVU0677 at 750.048 kb on - strand, within DVU0677 at 750.050 kb on - strand, within DVU0677 at 750.111 kb on - strand, within DVU0677 at 750.131 kb on - strand, within DVU0677 at 750.178 kb on - strand, within DVU0677 at 750.251 kb on + strand at 750.259 kb on - strand at 750.272 kb on - strand at 750.308 kb on - strand at 750.317 kb on - strand at 750.397 kb on - strand at 750.423 kb on - strand at 750.435 kb on - strand at 750.453 kb on + strand at 750.733 kb on + strand at 750.775 kb on + strand at 750.912 kb on - strand, within luxO at 750.917 kb on + strand, within luxO at 750.925 kb on - strand, within luxO at 750.925 kb on - strand, within luxO at 750.958 kb on + strand, within luxO at 750.997 kb on - strand, within luxO at 751.143 kb on + strand, within luxO at 751.202 kb on - strand, within luxO at 751.202 kb on - strand, within luxO at 751.230 kb on - strand, within luxO at 751.272 kb on + strand, within luxO
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.2% remove 748,272 + artQ DVU0676 0.23 -0.6 748,295 - artQ DVU0676 0.25 +0.3 748,306 - artQ DVU0676 0.27 +0.3 748,510 - artQ DVU0676 0.50 -1.0 748,551 + artQ DVU0676 0.54 -1.9 748,598 - artQ DVU0676 0.60 -0.1 748,695 - artQ DVU0676 0.70 -0.6 748,758 - artQ DVU0676 0.78 -0.1 748,791 + artQ DVU0676 0.81 -0.6 748,854 - artQ DVU0676 0.88 -0.0 748,889 - +0.3 748,889 - -0.4 748,925 + +0.1 749,073 + -0.5 749,106 + -1.6 749,119 - +0.3 749,145 + -0.4 749,153 - -0.1 749,178 + -0.3 749,181 - +0.5 749,186 - -1.8 749,192 - +0.1 749,202 - -0.5 749,254 - +0.5 749,261 + -0.2 749,261 + -0.4 749,274 - +0.6 749,278 + +0.1 749,344 - DVU0677 0.10 +0.3 749,408 + DVU0677 0.16 +0.0 749,428 - DVU0677 0.18 +0.2 749,564 + DVU0677 0.31 +0.4 749,749 + DVU0677 0.49 +0.1 749,749 + DVU0677 0.49 -0.2 749,778 - DVU0677 0.51 +0.2 749,812 - DVU0677 0.55 -0.1 749,821 + DVU0677 0.56 +0.0 749,865 - DVU0677 0.60 -0.0 749,909 + DVU0677 0.64 +0.1 750,048 - DVU0677 0.77 -0.4 750,050 - DVU0677 0.77 -0.0 750,111 - DVU0677 0.83 +0.2 750,131 - DVU0677 0.85 -0.0 750,178 - DVU0677 0.90 -0.6 750,251 + -0.8 750,259 - +0.1 750,272 - -0.0 750,308 - +0.2 750,317 - +0.4 750,397 - -0.2 750,423 - +0.4 750,435 - -0.2 750,453 + -2.0 750,733 + +0.2 750,775 + +0.2 750,912 - luxO DVU0679 0.18 +0.4 750,917 + luxO DVU0679 0.19 +0.1 750,925 - luxO DVU0679 0.19 -0.6 750,925 - luxO DVU0679 0.19 -0.1 750,958 + luxO DVU0679 0.22 +0.0 750,997 - luxO DVU0679 0.24 -0.3 751,143 + luxO DVU0679 0.34 -0.8 751,202 - luxO DVU0679 0.38 +0.2 751,202 - luxO DVU0679 0.38 +0.0 751,230 - luxO DVU0679 0.40 +0.4 751,272 + luxO DVU0679 0.43 -0.8
Or see this region's nucleotide sequence