Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08685

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,596,607	-				+0.6
1,596,608	+				-1.8
1,596,693	+				+0.6
1,596,696	-				-0.3
1,596,696	-				+1.0
1,596,696	-				-2.0
1,596,697	+				-0.3
1,596,719	+				+1.1
1,596,742	-				+1.3
1,596,742	-				+0.8
1,596,746	-				-1.3
1,596,750	+				-1.1
1,596,786	-		MMJJ_RS08680	0.10	-1.6
1,596,797	+		MMJJ_RS08680	0.12	-0.8
1,596,797	+		MMJJ_RS08680	0.12	-1.5
1,596,812	+		MMJJ_RS08680	0.13	-1.1
1,596,834	-		MMJJ_RS08680	0.16	+0.3
1,596,834	-		MMJJ_RS08680	0.16	+1.2
1,596,835	+		MMJJ_RS08680	0.16	-2.1
1,596,835	+		MMJJ_RS08680	0.16	+1.0
1,596,835	+		MMJJ_RS08680	0.16	+3.9
1,596,836	-		MMJJ_RS08680	0.16	+1.7
1,596,837	+		MMJJ_RS08680	0.16	-2.8
1,596,841	-		MMJJ_RS08680	0.17	-1.0
1,596,842	+		MMJJ_RS08680	0.17	+1.1
1,596,849	+		MMJJ_RS08680	0.18	-0.1
1,596,863	+		MMJJ_RS08680	0.19	-0.0
1,596,952	-		MMJJ_RS08680	0.30	+2.2
1,596,992	-		MMJJ_RS08680	0.34	+2.1
1,596,992	-		MMJJ_RS08680	0.34	+2.3
1,597,046	+		MMJJ_RS08680	0.40	+0.8
1,597,046	+		MMJJ_RS08680	0.40	+1.1
1,597,092	+		MMJJ_RS08680	0.46	+1.1
1,597,093	-		MMJJ_RS08680	0.46	+3.1
1,597,093	-		MMJJ_RS08680	0.46	+2.4
1,597,094	+		MMJJ_RS08680	0.46	-0.4
1,597,094	+		MMJJ_RS08680	0.46	+0.6
1,597,120	-		MMJJ_RS08680	0.49	-2.6
1,597,120	-		MMJJ_RS08680	0.49	+1.0
1,597,120	-		MMJJ_RS08680	0.49	-0.2
1,597,121	+		MMJJ_RS08680	0.49	+1.7
1,597,121	+		MMJJ_RS08680	0.49	-0.7
1,597,121	+		MMJJ_RS08680	0.49	-1.4
1,597,229	+		MMJJ_RS08680	0.62	-5.0
1,597,242	+		MMJJ_RS08680	0.63	-0.2
1,597,246	-		MMJJ_RS08680	0.64	-0.7
1,597,272	-		MMJJ_RS08680	0.67	+0.0
1,597,272	-		MMJJ_RS08680	0.67	+3.0
1,597,272	-		MMJJ_RS08680	0.67	-1.4
1,597,273	+		MMJJ_RS08680	0.67	+0.7
1,597,273	+		MMJJ_RS08680	0.67	+0.8
1,597,273	+		MMJJ_RS08680	0.67	+2.9
1,597,274	-		MMJJ_RS08680	0.67	-1.2
1,597,274	-		MMJJ_RS08680	0.67	+0.1
1,597,274	-		MMJJ_RS08680	0.67	+0.1
1,597,274	-		MMJJ_RS08680	0.67	-1.3
1,597,275	+		MMJJ_RS08680	0.67	-0.6
1,597,275	+		MMJJ_RS08680	0.67	+1.6
1,597,275	+		MMJJ_RS08680	0.67	+0.3
1,597,275	+		MMJJ_RS08680	0.67	-2.0
1,597,304	-		MMJJ_RS08680	0.70	+0.9
1,597,304	-		MMJJ_RS08680	0.70	-3.4
1,597,305	+		MMJJ_RS08680	0.70	+1.5
1,597,308	+		MMJJ_RS08680	0.71	+0.6
1,597,308	+		MMJJ_RS08680	0.71	+1.8
1,597,325	-		MMJJ_RS08680	0.73	+1.6
1,597,326	+		MMJJ_RS08680	0.73	-0.2
1,597,326	+		MMJJ_RS08680	0.73	+1.2
1,597,326	+		MMJJ_RS08680	0.73	-1.6
1,597,326	+		MMJJ_RS08680	0.73	+0.2
1,597,326	+		MMJJ_RS08680	0.73	+4.1
1,597,458	-		MMJJ_RS08680	0.88	+0.7
1,597,487	-				+0.4
1,597,487	-				+0.8
1,597,521	+				-2.5
1,597,521	+				+3.5
1,597,555	-				+2.4
1,597,556	+				+0.7
1,597,607	+				+1.6
1,597,607	+				-2.1
1,597,609	+				-2.2
1,597,617	+				+2.1
1,597,620	+				+0.7
1,597,620	+				-1.2
1,597,640	-				-2.9
1,597,650	+				+2.5
1,597,675	+		MMJJ_RS08685	0.12	-0.4
1,597,708	-		MMJJ_RS08685	0.15	-1.4
1,597,715	-		MMJJ_RS08685	0.16	+2.2
1,597,718	+		MMJJ_RS08685	0.16	+2.0
1,597,721	+		MMJJ_RS08685	0.17	+0.9
1,597,740	+		MMJJ_RS08685	0.19	-2.4
1,597,790	-		MMJJ_RS08685	0.25	+1.3
1,597,835	+		MMJJ_RS08685	0.30	-2.2
1,597,901	+		MMJJ_RS08685	0.37	-0.7
1,597,919	+		MMJJ_RS08685	0.39	+0.1
1,597,919	+		MMJJ_RS08685	0.39	+0.2
1,597,919	+		MMJJ_RS08685	0.39	-2.1
1,597,929	+		MMJJ_RS08685	0.41	+1.0
1,597,972	-		MMJJ_RS08685	0.45	+0.2
1,597,973	+		MMJJ_RS08685	0.46	+2.2
1,597,985	-		MMJJ_RS08685	0.47	+0.7
1,597,985	-		MMJJ_RS08685	0.47	+0.7
1,597,991	-		MMJJ_RS08685	0.48	+0.6
1,598,025	-		MMJJ_RS08685	0.51	+0.3
1,598,058	+		MMJJ_RS08685	0.55	+0.9
1,598,070	+		MMJJ_RS08685	0.57	+1.2
1,598,070	+		MMJJ_RS08685	0.57	-1.0
1,598,077	-		MMJJ_RS08685	0.57	+0.1
1,598,078	+		MMJJ_RS08685	0.58	+1.6
1,598,078	+		MMJJ_RS08685	0.58	-2.3
1,598,091	-		MMJJ_RS08685	0.59	+0.9
1,598,091	-		MMJJ_RS08685	0.59	+2.0
1,598,091	-		MMJJ_RS08685	0.59	+1.3
1,598,096	-		MMJJ_RS08685	0.60	+0.9
1,598,096	-		MMJJ_RS08685	0.60	+0.6
1,598,096	-		MMJJ_RS08685	0.60	-0.6
1,598,135	-		MMJJ_RS08685	0.64	+2.0
1,598,136	+		MMJJ_RS08685	0.64	+1.9
1,598,136	+		MMJJ_RS08685	0.64	+2.1
1,598,138	-		MMJJ_RS08685	0.64	-2.6
1,598,141	+		MMJJ_RS08685	0.65	+3.3
1,598,196	+		MMJJ_RS08685	0.71	+0.9
1,598,211	+		MMJJ_RS08685	0.73	+1.9
1,598,223	+		MMJJ_RS08685	0.74	-1.0
1,598,228	-		MMJJ_RS08685	0.75	+1.7
1,598,331	+		MMJJ_RS08685	0.86	-1.1
1,598,345	+		MMJJ_RS08685	0.88	+2.2
1,598,349	+		MMJJ_RS08685	0.88	+1.3
1,598,374	-				+1.1
1,598,375	+				+1.9
1,598,378	-				-0.4
1,598,379	+				+1.6
1,598,387	-				+3.7
1,598,405	-				+2.0
1,598,408	-				+0.5
1,598,410	-				-0.2
1,598,411	+				+0.8
1,598,411	+				+2.3
1,598,444	+				+0.3
1,598,463	+				-0.1
1,598,463	+				-1.3
1,598,469	+				+0.7
1,598,469	+				+0.5
1,598,519	-				-0.6
1,598,537	+				+0.3
1,598,537	+				+1.8
1,598,546	-				+0.9
1,598,547	+				+2.1
1,598,584	-				+0.1
1,598,599	+				-0.3
1,598,634	-		MMJJ_RS08690	0.12	+0.6
1,598,638	+		MMJJ_RS08690	0.13	+1.0
1,598,644	-		MMJJ_RS08690	0.14	+0.2
1,598,644	-		MMJJ_RS08690	0.14	-0.8
1,598,644	-		MMJJ_RS08690	0.14	-0.6
1,598,645	+		MMJJ_RS08690	0.14	-0.0
1,598,645	+		MMJJ_RS08690	0.14	+0.4
1,598,645	-		MMJJ_RS08690	0.14	-0.8
1,598,663	-		MMJJ_RS08690	0.16	-1.1
1,598,663	-		MMJJ_RS08690	0.16	+1.0
1,598,664	+		MMJJ_RS08690	0.16	-1.4
1,598,664	+		MMJJ_RS08690	0.16	+2.2
1,598,664	+		MMJJ_RS08690	0.16	-2.1
1,598,664	+		MMJJ_RS08690	0.16	+0.8
1,598,664	+		MMJJ_RS08690	0.16	+2.5
1,598,664	+		MMJJ_RS08690	0.16	+2.7
1,598,664	+		MMJJ_RS08690	0.16	-2.7
1,598,678	+		MMJJ_RS08690	0.18	+0.9
1,598,692	+		MMJJ_RS08690	0.19	-2.9
1,598,699	+		MMJJ_RS08690	0.20	+2.6
1,598,721	-		MMJJ_RS08690	0.23	+2.0
1,598,722	+		MMJJ_RS08690	0.23	+1.4
1,598,738	-		MMJJ_RS08690	0.25	+2.5
1,598,739	+		MMJJ_RS08690	0.25	+2.5
1,598,905	+		MMJJ_RS08690	0.44	-2.0
1,598,905	+		MMJJ_RS08690	0.44	-0.3
1,599,014	+		MMJJ_RS08690	0.57	+1.7
1,599,280	+		MMJJ_RS08690	0.89	+3.9
1,599,292	+				+2.0
1,599,294	-				-1.6
1,599,295	+				+2.3
1,599,295	+				+3.6
1,599,295	+				+0.5
1,599,350	+				+2.4
1,599,350	+				-0.3
1,599,358	-				-1.8
1,599,358	-				-1.6
1,599,358	-				+1.0
1,599,359	+				+0.7
1,599,359	+				-1.5
1,599,359	+				-0.5
1,599,359	+				-2.6
1,599,359	+				+2.6
1,599,361	+				+3.0
1,599,361	+				+2.4
1,599,361	+				+0.3
1,599,392	-				+1.9
1,599,397	-				+1.0
1,599,398	+				-1.2
1,599,399	-				+1.3
1,599,399	-				+1.0
1,599,400	+				+2.0