Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS06340 and MMJJ_RS06345 are separated by 47 nucleotides MMJJ_RS06345 and MMJJ_RS06350 are separated by 9 nucleotides MMJJ_RS06350 and MMJJ_RS06355 are separated by 8 nucleotides MMJJ_RS06355 and MMJJ_RS06360 are separated by 11 nucleotides
MMJJ_RS06340: MMJJ_RS06340 - coenzyme-B sulfoethylthiotransferase subunit alpha, at 1,173,920 to 1,175,581
_RS06340
MMJJ_RS06345: MMJJ_RS06345 - coenzyme-B sulfoethylthiotransferase subunit gamma, at 1,175,629 to 1,176,411
_RS06345
MMJJ_RS06350: MMJJ_RS06350 - methyl-coenzyme M reductase I operon protein C, at 1,176,421 to 1,177,017
_RS06350
MMJJ_RS06355: MMJJ_RS06355 - methyl-coenzyme M reductase operon protein D, at 1,177,026 to 1,177,505
_RS06355
MMJJ_RS06360: MMJJ_RS06360 - coenzyme-B sulfoethylthiotransferase subunit beta, at 1,177,517 to 1,178,848
_RS06360
Position (kb) 1176
1177
1178 Strain fitness (log2 ratio) -1
0
1 at 1176.067 kb on - strand at 1176.107 kb on - strand, within MMJJ_RS06345 at 1176.129 kb on + strand, within MMJJ_RS06345 at 1176.335 kb on - strand at 1176.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 1,176,067 - +0.0 1,176,107 - MMJJ_RS06345 0.61 +0.0 1,176,129 + MMJJ_RS06345 0.64 +0.0 1,176,335 - -0.3 1,176,405 + -0.3
Or see this region's nucleotide sequence