Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06330

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06320 and MMJJ_RS06325 are separated by 10 nucleotidesMMJJ_RS06325 and MMJJ_RS06330 are separated by 36 nucleotidesMMJJ_RS06330 and MMJJ_RS06335 are separated by 26 nucleotides MMJJ_RS06320: MMJJ_RS06320 - tetrahydromethanopterin S-methyltransferase subunit B, at 1,170,857 to 1,171,183 _RS06320 MMJJ_RS06325: MMJJ_RS06325 - tetrahydromethanopterin S-methyltransferase subunit C, at 1,171,194 to 1,171,982 _RS06325 MMJJ_RS06330: MMJJ_RS06330 - tetrahydromethanopterin S-methyltransferase subunit D, at 1,172,019 to 1,172,726 _RS06330 MMJJ_RS06335: MMJJ_RS06335 - tetrahydromethanopterin S-methyltransferase subunit E, at 1,172,753 to 1,173,652 _RS06335 Position (kb) 1172 1173Strain fitness (log2 ratio) -2 -1 0 1at 1171.166 kb on - strandat 1171.779 kb on + strand, within MMJJ_RS06325at 1171.863 kb on + strand, within MMJJ_RS06325at 1171.987 kb on + strandat 1171.987 kb on + strandat 1172.240 kb on + strand, within MMJJ_RS06330at 1172.479 kb on + strand, within MMJJ_RS06330at 1172.602 kb on + strand, within MMJJ_RS06330at 1172.939 kb on - strand, within MMJJ_RS06335at 1172.948 kb on + strand, within MMJJ_RS06335at 1173.451 kb on + strandat 1173.716 kb on - strandat 1173.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,171,166 - -0.8
1,171,779 + MMJJ_RS06325 0.74 -0.6
1,171,863 + MMJJ_RS06325 0.85 +0.4
1,171,987 + +0.4
1,171,987 + +0.4
1,172,240 + MMJJ_RS06330 0.31 -1.8
1,172,479 + MMJJ_RS06330 0.65 -1.3
1,172,602 + MMJJ_RS06330 0.82 -0.8
1,172,939 - MMJJ_RS06335 0.21 -0.6
1,172,948 + MMJJ_RS06335 0.22 +1.4
1,173,451 + +0.0
1,173,716 - -1.6
1,173,722 - -1.0

Or see this region's nucleotide sequence