Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05010 and MMJJ_RS05015 are separated by 32 nucleotides MMJJ_RS05015 and MMJJ_RS05020 are separated by 20 nucleotides MMJJ_RS05020 and MMJJ_RS05025 are separated by 27 nucleotides
MMJJ_RS05010: MMJJ_RS05010 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 930,593 to 931,672
_RS05010
MMJJ_RS05015: MMJJ_RS05015 - hypothetical protein, at 931,705 to 932,475
_RS05015
MMJJ_RS05020: MMJJ_RS05020 - glutamate synthase-related protein, at 932,496 to 934,028
_RS05020
MMJJ_RS05025: MMJJ_RS05025 - glutamine amidotransferase family protein, at 934,056 to 935,147
_RS05025
Position (kb) 932
933
934
935 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 931.522 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.570 kb on - strand at 931.571 kb on + strand at 931.571 kb on + strand at 931.575 kb on - strand at 931.575 kb on - strand at 931.577 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.580 kb on + strand at 931.580 kb on + strand at 931.595 kb on - strand at 931.596 kb on + strand at 931.596 kb on + strand at 931.640 kb on - strand at 931.641 kb on + strand at 931.653 kb on + strand at 931.672 kb on - strand at 931.693 kb on + strand at 931.706 kb on - strand at 931.929 kb on + strand, within MMJJ_RS05015 at 932.833 kb on + strand at 933.373 kb on - strand, within MMJJ_RS05020 at 933.507 kb on - strand, within MMJJ_RS05020 at 933.645 kb on - strand, within MMJJ_RS05020 at 933.703 kb on - strand at 933.741 kb on - strand, within MMJJ_RS05020 at 933.742 kb on + strand, within MMJJ_RS05020 at 933.898 kb on - strand at 934.000 kb on - strand at 934.023 kb on - strand at 934.547 kb on - strand, within MMJJ_RS05025 at 934.631 kb on + strand at 934.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 931,522 - MMJJ_RS05010 0.86 +0.3 931,525 - MMJJ_RS05010 0.86 +1.3 931,525 - MMJJ_RS05010 0.86 -1.5 931,525 - MMJJ_RS05010 0.86 +0.1 931,525 - MMJJ_RS05010 0.86 -3.1 931,526 + MMJJ_RS05010 0.86 -0.2 931,526 + MMJJ_RS05010 0.86 -0.2 931,526 + MMJJ_RS05010 0.86 -1.3 931,526 + MMJJ_RS05010 0.86 -0.9 931,570 - +3.9 931,571 + +0.7 931,571 + -3.0 931,575 - +1.6 931,575 - +0.7 931,577 - -1.3 931,579 - +1.7 931,579 - +2.6 931,579 - +0.4 931,579 - +1.4 931,580 + -2.1 931,580 + +0.0 931,595 - +1.8 931,596 + -0.1 931,596 + +0.4 931,640 - +0.7 931,641 + +2.1 931,653 + -5.2 931,672 - +1.9 931,693 + -1.1 931,706 - +0.4 931,929 + MMJJ_RS05015 0.29 -0.9 932,833 + -1.3 933,373 - MMJJ_RS05020 0.57 -2.1 933,507 - MMJJ_RS05020 0.66 +1.7 933,645 - MMJJ_RS05020 0.75 -1.5 933,703 - -0.9 933,741 - MMJJ_RS05020 0.81 -0.3 933,742 + MMJJ_RS05020 0.81 +0.3 933,898 - -1.5 934,000 - +0.1 934,023 - -0.5 934,547 - MMJJ_RS05025 0.45 -1.5 934,631 + +0.1 934,955 - -0.7
Or see this region's nucleotide sequence