Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05010 and MMJJ_RS05015 are separated by 32 nucleotides MMJJ_RS05015 and MMJJ_RS05020 are separated by 20 nucleotides
MMJJ_RS05010: MMJJ_RS05010 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 930,593 to 931,672
_RS05010
MMJJ_RS05015: MMJJ_RS05015 - hypothetical protein, at 931,705 to 932,475
_RS05015
MMJJ_RS05020: MMJJ_RS05020 - glutamate synthase-related protein, at 932,496 to 934,028
_RS05020
Position (kb) 931
932
933 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 930.729 kb on + strand, within MMJJ_RS05010 at 930.731 kb on - strand, within MMJJ_RS05010 at 930.732 kb on + strand, within MMJJ_RS05010 at 930.796 kb on - strand, within MMJJ_RS05010 at 930.831 kb on - strand, within MMJJ_RS05010 at 930.832 kb on + strand, within MMJJ_RS05010 at 930.832 kb on + strand, within MMJJ_RS05010 at 930.832 kb on + strand, within MMJJ_RS05010 at 930.854 kb on + strand, within MMJJ_RS05010 at 930.863 kb on - strand, within MMJJ_RS05010 at 930.863 kb on - strand, within MMJJ_RS05010 at 930.864 kb on + strand, within MMJJ_RS05010 at 930.875 kb on - strand, within MMJJ_RS05010 at 930.875 kb on - strand, within MMJJ_RS05010 at 930.875 kb on - strand, within MMJJ_RS05010 at 930.875 kb on - strand, within MMJJ_RS05010 at 930.875 kb on - strand, within MMJJ_RS05010 at 930.876 kb on + strand, within MMJJ_RS05010 at 930.876 kb on + strand, within MMJJ_RS05010 at 930.876 kb on + strand, within MMJJ_RS05010 at 930.876 kb on + strand, within MMJJ_RS05010 at 930.876 kb on + strand, within MMJJ_RS05010 at 930.887 kb on - strand, within MMJJ_RS05010 at 930.887 kb on - strand, within MMJJ_RS05010 at 930.950 kb on - strand, within MMJJ_RS05010 at 930.951 kb on + strand, within MMJJ_RS05010 at 930.951 kb on + strand, within MMJJ_RS05010 at 930.967 kb on - strand, within MMJJ_RS05010 at 931.037 kb on - strand, within MMJJ_RS05010 at 931.038 kb on + strand, within MMJJ_RS05010 at 931.075 kb on - strand, within MMJJ_RS05010 at 931.076 kb on + strand, within MMJJ_RS05010 at 931.128 kb on + strand, within MMJJ_RS05010 at 931.128 kb on + strand, within MMJJ_RS05010 at 931.140 kb on + strand, within MMJJ_RS05010 at 931.170 kb on - strand, within MMJJ_RS05010 at 931.170 kb on - strand, within MMJJ_RS05010 at 931.170 kb on - strand, within MMJJ_RS05010 at 931.174 kb on - strand, within MMJJ_RS05010 at 931.175 kb on + strand, within MMJJ_RS05010 at 931.219 kb on + strand, within MMJJ_RS05010 at 931.243 kb on - strand, within MMJJ_RS05010 at 931.255 kb on - strand, within MMJJ_RS05010 at 931.274 kb on - strand, within MMJJ_RS05010 at 931.275 kb on + strand, within MMJJ_RS05010 at 931.331 kb on + strand, within MMJJ_RS05010 at 931.400 kb on + strand, within MMJJ_RS05010 at 931.437 kb on - strand, within MMJJ_RS05010 at 931.437 kb on - strand, within MMJJ_RS05010 at 931.438 kb on + strand, within MMJJ_RS05010 at 931.438 kb on + strand, within MMJJ_RS05010 at 931.455 kb on + strand, within MMJJ_RS05010 at 931.455 kb on + strand, within MMJJ_RS05010 at 931.461 kb on - strand, within MMJJ_RS05010 at 931.469 kb on - strand, within MMJJ_RS05010 at 931.470 kb on + strand, within MMJJ_RS05010 at 931.522 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.525 kb on - strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.526 kb on + strand, within MMJJ_RS05010 at 931.570 kb on - strand at 931.571 kb on + strand at 931.571 kb on + strand at 931.575 kb on - strand at 931.575 kb on - strand at 931.577 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.579 kb on - strand at 931.580 kb on + strand at 931.580 kb on + strand at 931.595 kb on - strand at 931.596 kb on + strand at 931.596 kb on + strand at 931.640 kb on - strand at 931.641 kb on + strand at 931.653 kb on + strand at 931.672 kb on - strand at 931.693 kb on + strand at 931.706 kb on - strand at 931.929 kb on + strand, within MMJJ_RS05015 at 932.833 kb on + strand at 933.373 kb on - strand, within MMJJ_RS05020
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 930,729 + MMJJ_RS05010 0.13 +2.0 930,731 - MMJJ_RS05010 0.13 -2.2 930,732 + MMJJ_RS05010 0.13 -2.7 930,796 - MMJJ_RS05010 0.19 +1.2 930,831 - MMJJ_RS05010 0.22 +0.1 930,832 + MMJJ_RS05010 0.22 -0.7 930,832 + MMJJ_RS05010 0.22 +1.4 930,832 + MMJJ_RS05010 0.22 -1.0 930,854 + MMJJ_RS05010 0.24 -1.4 930,863 - MMJJ_RS05010 0.25 +2.1 930,863 - MMJJ_RS05010 0.25 +2.6 930,864 + MMJJ_RS05010 0.25 -1.0 930,875 - MMJJ_RS05010 0.26 -0.1 930,875 - MMJJ_RS05010 0.26 -0.4 930,875 - MMJJ_RS05010 0.26 +0.3 930,875 - MMJJ_RS05010 0.26 -2.8 930,875 - MMJJ_RS05010 0.26 -1.2 930,876 + MMJJ_RS05010 0.26 -2.8 930,876 + MMJJ_RS05010 0.26 +0.1 930,876 + MMJJ_RS05010 0.26 +0.6 930,876 + MMJJ_RS05010 0.26 +1.4 930,876 + MMJJ_RS05010 0.26 +0.8 930,887 - MMJJ_RS05010 0.27 -1.3 930,887 - MMJJ_RS05010 0.27 -1.3 930,950 - MMJJ_RS05010 0.33 -0.7 930,951 + MMJJ_RS05010 0.33 +0.4 930,951 + MMJJ_RS05010 0.33 -1.0 930,967 - MMJJ_RS05010 0.35 +0.9 931,037 - MMJJ_RS05010 0.41 +0.8 931,038 + MMJJ_RS05010 0.41 -0.6 931,075 - MMJJ_RS05010 0.45 -2.7 931,076 + MMJJ_RS05010 0.45 -1.7 931,128 + MMJJ_RS05010 0.50 -1.1 931,128 + MMJJ_RS05010 0.50 +1.2 931,140 + MMJJ_RS05010 0.51 +0.9 931,170 - MMJJ_RS05010 0.53 +1.3 931,170 - MMJJ_RS05010 0.53 -2.9 931,170 - MMJJ_RS05010 0.53 +0.6 931,174 - MMJJ_RS05010 0.54 -3.0 931,175 + MMJJ_RS05010 0.54 -2.2 931,219 + MMJJ_RS05010 0.58 +0.6 931,243 - MMJJ_RS05010 0.60 +0.9 931,255 - MMJJ_RS05010 0.61 -0.0 931,274 - MMJJ_RS05010 0.63 -0.0 931,275 + MMJJ_RS05010 0.63 +1.8 931,331 + MMJJ_RS05010 0.68 -0.1 931,400 + MMJJ_RS05010 0.75 +2.2 931,437 - MMJJ_RS05010 0.78 -1.7 931,437 - MMJJ_RS05010 0.78 +2.5 931,438 + MMJJ_RS05010 0.78 +2.6 931,438 + MMJJ_RS05010 0.78 +0.5 931,455 + MMJJ_RS05010 0.80 +0.6 931,455 + MMJJ_RS05010 0.80 +2.1 931,461 - MMJJ_RS05010 0.80 +0.2 931,469 - MMJJ_RS05010 0.81 +1.8 931,470 + MMJJ_RS05010 0.81 +2.8 931,522 - MMJJ_RS05010 0.86 +0.3 931,525 - MMJJ_RS05010 0.86 +1.3 931,525 - MMJJ_RS05010 0.86 -1.5 931,525 - MMJJ_RS05010 0.86 +0.1 931,525 - MMJJ_RS05010 0.86 -3.1 931,526 + MMJJ_RS05010 0.86 -0.2 931,526 + MMJJ_RS05010 0.86 -0.2 931,526 + MMJJ_RS05010 0.86 -1.3 931,526 + MMJJ_RS05010 0.86 -0.9 931,570 - +3.9 931,571 + +0.7 931,571 + -3.0 931,575 - +1.6 931,575 - +0.7 931,577 - -1.3 931,579 - +1.7 931,579 - +2.6 931,579 - +0.4 931,579 - +1.4 931,580 + -2.1 931,580 + +0.0 931,595 - +1.8 931,596 + -0.1 931,596 + +0.4 931,640 - +0.7 931,641 + +2.1 931,653 + -5.2 931,672 - +1.9 931,693 + -1.1 931,706 - +0.4 931,929 + MMJJ_RS05015 0.29 -0.9 932,833 + -1.3 933,373 - MMJJ_RS05020 0.57 -2.1
Or see this region's nucleotide sequence