Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04690

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04685 and MMJJ_RS04690 are separated by 49 nucleotidesMMJJ_RS04690 and MMJJ_RS04695 are separated by 23 nucleotides MMJJ_RS04685: MMJJ_RS04685 - carbamoyltransferase HypF, at 875,026 to 877,341 _RS04685 MMJJ_RS04690: MMJJ_RS04690 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 877,391 to 878,518 _RS04690 MMJJ_RS04695: MMJJ_RS04695 - formate dehydrogenase subunit alpha, at 878,542 to 880,572 _RS04695 Position (kb) 877 878 879Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 876.400 kb on + strandat 876.400 kb on + strand, within MMJJ_RS04685at 876.420 kb on + strand, within MMJJ_RS04685at 876.527 kb on + strand, within MMJJ_RS04685at 876.610 kb on + strand, within MMJJ_RS04685at 876.626 kb on - strand, within MMJJ_RS04685at 876.710 kb on + strandat 876.781 kb on + strand, within MMJJ_RS04685at 876.784 kb on - strand, within MMJJ_RS04685at 876.784 kb on - strandat 876.809 kb on - strand, within MMJJ_RS04685at 876.810 kb on + strand, within MMJJ_RS04685at 876.852 kb on - strand, within MMJJ_RS04685at 876.853 kb on + strandat 876.916 kb on - strand, within MMJJ_RS04685at 876.974 kb on - strand, within MMJJ_RS04685at 877.026 kb on + strand, within MMJJ_RS04685at 877.028 kb on - strandat 877.028 kb on - strand, within MMJJ_RS04685at 877.028 kb on - strand, within MMJJ_RS04685at 877.029 kb on + strand, within MMJJ_RS04685at 877.029 kb on + strand, within MMJJ_RS04685at 877.167 kb on - strandat 877.185 kb on - strandat 877.211 kb on - strandat 877.212 kb on + strandat 877.336 kb on + strandat 877.370 kb on + strandat 877.376 kb on - strandat 877.377 kb on + strandat 877.382 kb on - strandat 877.382 kb on - strandat 877.382 kb on - strandat 877.383 kb on + strandat 877.386 kb on - strandat 877.386 kb on - strandat 877.387 kb on + strandat 877.387 kb on + strandat 877.389 kb on - strandat 877.393 kb on + strandat 877.393 kb on + strandat 877.393 kb on + strandat 877.396 kb on - strandat 877.397 kb on + strandat 877.397 kb on + strandat 877.398 kb on - strandat 877.411 kb on - strandat 877.412 kb on + strandat 877.412 kb on + strandat 877.441 kb on - strandat 877.474 kb on + strandat 877.474 kb on + strandat 877.476 kb on + strandat 877.505 kb on - strand, within MMJJ_RS04690at 877.505 kb on - strand, within MMJJ_RS04690at 877.505 kb on - strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.529 kb on - strand, within MMJJ_RS04690at 877.530 kb on + strand, within MMJJ_RS04690at 877.532 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.608 kb on - strand, within MMJJ_RS04690at 877.608 kb on - strand, within MMJJ_RS04690at 877.619 kb on - strand, within MMJJ_RS04690at 877.620 kb on + strand, within MMJJ_RS04690at 877.620 kb on + strand, within MMJJ_RS04690at 877.643 kb on - strand, within MMJJ_RS04690at 877.643 kb on - strand, within MMJJ_RS04690at 877.644 kb on + strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.653 kb on + strand, within MMJJ_RS04690at 877.653 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.763 kb on + strand, within MMJJ_RS04690at 877.763 kb on + strand, within MMJJ_RS04690at 877.827 kb on + strand, within MMJJ_RS04690at 877.827 kb on + strand, within MMJJ_RS04690at 877.856 kb on - strand, within MMJJ_RS04690at 878.040 kb on + strand, within MMJJ_RS04690at 878.049 kb on + strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.096 kb on - strand, within MMJJ_RS04690at 878.097 kb on + strand, within MMJJ_RS04690at 878.104 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.174 kb on - strand, within MMJJ_RS04690at 878.174 kb on - strand, within MMJJ_RS04690at 878.175 kb on + strand, within MMJJ_RS04690at 878.175 kb on + strand, within MMJJ_RS04690at 878.180 kb on + strand, within MMJJ_RS04690at 878.214 kb on + strand, within MMJJ_RS04690at 878.216 kb on - strand, within MMJJ_RS04690at 878.246 kb on - strand, within MMJJ_RS04690at 878.246 kb on - strand, within MMJJ_RS04690at 878.279 kb on - strand, within MMJJ_RS04690at 878.478 kb on + strandat 878.483 kb on + strandat 878.508 kb on - strandat 878.509 kb on + strandat 878.536 kb on - strandat 878.638 kb on - strandat 878.639 kb on + strandat 878.657 kb on - strandat 878.657 kb on - strandat 878.658 kb on + strandat 878.658 kb on + strandat 878.658 kb on + strandat 878.658 kb on + strandat 878.663 kb on + strandat 878.704 kb on - strandat 878.704 kb on - strandat 878.705 kb on + strandat 878.705 kb on + strandat 878.705 kb on + strandat 878.731 kb on + strandat 878.749 kb on - strand, within MMJJ_RS04695at 878.780 kb on + strand, within MMJJ_RS04695at 878.811 kb on - strand, within MMJJ_RS04695at 878.849 kb on - strand, within MMJJ_RS04695at 878.849 kb on - strand, within MMJJ_RS04695at 878.850 kb on + strand, within MMJJ_RS04695at 878.850 kb on + strand, within MMJJ_RS04695at 878.860 kb on - strand, within MMJJ_RS04695at 878.861 kb on + strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.874 kb on - strand, within MMJJ_RS04695at 878.875 kb on + strand, within MMJJ_RS04695at 878.875 kb on + strand, within MMJJ_RS04695at 878.875 kb on + strand, within MMJJ_RS04695at 878.878 kb on - strand, within MMJJ_RS04695at 878.878 kb on - strand, within MMJJ_RS04695at 878.878 kb on - strand, within MMJJ_RS04695at 878.878 kb on - strand, within MMJJ_RS04695at 878.879 kb on + strand, within MMJJ_RS04695at 878.889 kb on + strand, within MMJJ_RS04695at 878.919 kb on - strand, within MMJJ_RS04695at 878.920 kb on + strand, within MMJJ_RS04695at 878.934 kb on - strand, within MMJJ_RS04695at 879.010 kb on + strand, within MMJJ_RS04695at 879.010 kb on + strand, within MMJJ_RS04695at 879.062 kb on - strand, within MMJJ_RS04695at 879.062 kb on - strand, within MMJJ_RS04695at 879.072 kb on - strand, within MMJJ_RS04695at 879.094 kb on - strand, within MMJJ_RS04695at 879.163 kb on + strand, within MMJJ_RS04695at 879.163 kb on + strand, within MMJJ_RS04695at 879.277 kb on - strand, within MMJJ_RS04695at 879.277 kb on - strand, within MMJJ_RS04695at 879.326 kb on + strand, within MMJJ_RS04695at 879.337 kb on - strand, within MMJJ_RS04695at 879.367 kb on - strand, within MMJJ_RS04695at 879.367 kb on - strand, within MMJJ_RS04695at 879.367 kb on - strand, within MMJJ_RS04695at 879.368 kb on + strand, within MMJJ_RS04695at 879.368 kb on + strand, within MMJJ_RS04695at 879.368 kb on + strand, within MMJJ_RS04695at 879.370 kb on + strand, within MMJJ_RS04695at 879.414 kb on + strand, within MMJJ_RS04695at 879.440 kb on + strand, within MMJJ_RS04695at 879.457 kb on - strand, within MMJJ_RS04695at 879.475 kb on - strand, within MMJJ_RS04695at 879.476 kb on + strand, within MMJJ_RS04695

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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876,400 + +0.6
876,400 + MMJJ_RS04685 0.59 -1.7
876,420 + MMJJ_RS04685 0.60 -2.5
876,527 + MMJJ_RS04685 0.65 -1.8
876,610 + MMJJ_RS04685 0.68 -1.1
876,626 - MMJJ_RS04685 0.69 -3.1
876,710 + +0.0
876,781 + MMJJ_RS04685 0.76 -3.3
876,784 - MMJJ_RS04685 0.76 -2.7
876,784 - +0.0
876,809 - MMJJ_RS04685 0.77 -2.4
876,810 + MMJJ_RS04685 0.77 -1.0
876,852 - MMJJ_RS04685 0.79 -1.0
876,853 + -0.7
876,916 - MMJJ_RS04685 0.82 -1.2
876,974 - MMJJ_RS04685 0.84 +0.5
877,026 + MMJJ_RS04685 0.86 -2.0
877,028 - -0.4
877,028 - MMJJ_RS04685 0.86 -2.5
877,028 - MMJJ_RS04685 0.86 -1.7
877,029 + MMJJ_RS04685 0.86 -2.1
877,029 + MMJJ_RS04685 0.86 -1.8
877,167 - -2.2
877,185 - -1.5
877,211 - -1.7
877,212 + -1.0
877,336 + +3.5
877,370 + +0.9
877,376 - +1.6
877,377 + +2.0
877,382 - +1.1
877,382 - +0.0
877,382 - -1.7
877,383 + -0.2
877,386 - -0.5
877,386 - -0.3
877,387 + +0.0
877,387 + +1.9
877,389 - +0.1
877,393 + -2.0
877,393 + +1.6
877,393 + +0.0
877,396 - -0.8
877,397 + -1.0
877,397 + -3.2
877,398 - +2.8
877,411 - +3.0
877,412 + -2.8
877,412 + +3.6
877,441 - +0.7
877,474 + +3.5
877,474 + +1.1
877,476 + -0.2
877,505 - MMJJ_RS04690 0.10 -0.4
877,505 - MMJJ_RS04690 0.10 +0.0
877,505 - MMJJ_RS04690 0.10 -1.7
877,506 + MMJJ_RS04690 0.10 +1.2
877,506 + MMJJ_RS04690 0.10 +0.4
877,506 + MMJJ_RS04690 0.10 -4.7
877,529 - MMJJ_RS04690 0.12 -1.0
877,530 + MMJJ_RS04690 0.12 -0.1
877,532 + MMJJ_RS04690 0.12 -2.2
877,590 + MMJJ_RS04690 0.18 -2.9
877,590 + MMJJ_RS04690 0.18 +3.2
877,590 + MMJJ_RS04690 0.18 +1.6
877,608 - MMJJ_RS04690 0.19 -0.6
877,608 - MMJJ_RS04690 0.19 -2.0
877,619 - MMJJ_RS04690 0.20 -0.7
877,620 + MMJJ_RS04690 0.20 -0.0
877,620 + MMJJ_RS04690 0.20 -2.4
877,643 - MMJJ_RS04690 0.22 +1.0
877,643 - MMJJ_RS04690 0.22 -1.5
877,644 + MMJJ_RS04690 0.22 +1.0
877,652 - MMJJ_RS04690 0.23 +0.5
877,652 - MMJJ_RS04690 0.23 +3.3
877,652 - MMJJ_RS04690 0.23 +0.0
877,652 - MMJJ_RS04690 0.23 +0.6
877,652 - MMJJ_RS04690 0.23 -0.3
877,652 - MMJJ_RS04690 0.23 -2.0
877,653 + MMJJ_RS04690 0.23 +0.6
877,653 + MMJJ_RS04690 0.23 +0.1
877,661 + MMJJ_RS04690 0.24 +1.2
877,661 + MMJJ_RS04690 0.24 -2.7
877,661 + MMJJ_RS04690 0.24 +1.6
877,763 + MMJJ_RS04690 0.33 +2.7
877,763 + MMJJ_RS04690 0.33 +0.9
877,827 + MMJJ_RS04690 0.39 +2.2
877,827 + MMJJ_RS04690 0.39 +1.7
877,856 - MMJJ_RS04690 0.41 -3.8
878,040 + MMJJ_RS04690 0.58 -3.0
878,049 + MMJJ_RS04690 0.58 +0.8
878,081 - MMJJ_RS04690 0.61 -0.8
878,081 - MMJJ_RS04690 0.61 -0.2
878,081 - MMJJ_RS04690 0.61 +1.5
878,096 - MMJJ_RS04690 0.62 +0.8
878,097 + MMJJ_RS04690 0.63 +0.9
878,104 + MMJJ_RS04690 0.63 -2.6
878,171 + MMJJ_RS04690 0.69 +1.7
878,171 + MMJJ_RS04690 0.69 -2.0
878,171 + MMJJ_RS04690 0.69 +2.3
878,174 - MMJJ_RS04690 0.69 -0.5
878,174 - MMJJ_RS04690 0.69 -2.5
878,175 + MMJJ_RS04690 0.70 +0.9
878,175 + MMJJ_RS04690 0.70 +2.5
878,180 + MMJJ_RS04690 0.70 -4.5
878,214 + MMJJ_RS04690 0.73 -2.5
878,216 - MMJJ_RS04690 0.73 -0.6
878,246 - MMJJ_RS04690 0.76 -0.3
878,246 - MMJJ_RS04690 0.76 +1.0
878,279 - MMJJ_RS04690 0.79 +1.1
878,478 + -1.2
878,483 + +0.9
878,508 - -1.7
878,509 + -0.3
878,536 - -0.0
878,638 - -3.2
878,639 + -0.0
878,657 - +1.6
878,657 - +0.6
878,658 + -1.3
878,658 + +1.6
878,658 + -0.0
878,658 + -1.3
878,663 + +1.7
878,704 - +2.8
878,704 - +0.4
878,705 + +1.1
878,705 + -1.0
878,705 + +1.9
878,731 + +2.1
878,749 - MMJJ_RS04695 0.10 -0.9
878,780 + MMJJ_RS04695 0.12 +0.4
878,811 - MMJJ_RS04695 0.13 +2.3
878,849 - MMJJ_RS04695 0.15 +0.0
878,849 - MMJJ_RS04695 0.15 +4.4
878,850 + MMJJ_RS04695 0.15 -1.1
878,850 + MMJJ_RS04695 0.15 +1.9
878,860 - MMJJ_RS04695 0.16 +0.6
878,861 + MMJJ_RS04695 0.16 +0.5
878,874 - MMJJ_RS04695 0.16 -0.7
878,874 - MMJJ_RS04695 0.16 +1.0
878,874 - MMJJ_RS04695 0.16 -2.8
878,874 - MMJJ_RS04695 0.16 +1.3
878,874 - MMJJ_RS04695 0.16 -0.3
878,874 - MMJJ_RS04695 0.16 -2.2
878,875 + MMJJ_RS04695 0.16 +0.4
878,875 + MMJJ_RS04695 0.16 -1.0
878,875 + MMJJ_RS04695 0.16 +1.7
878,878 - MMJJ_RS04695 0.17 -2.0
878,878 - MMJJ_RS04695 0.17 -2.7
878,878 - MMJJ_RS04695 0.17 +1.6
878,878 - MMJJ_RS04695 0.17 -1.0
878,879 + MMJJ_RS04695 0.17 +0.9
878,889 + MMJJ_RS04695 0.17 -0.0
878,919 - MMJJ_RS04695 0.19 +0.5
878,920 + MMJJ_RS04695 0.19 -0.8
878,934 - MMJJ_RS04695 0.19 +4.0
879,010 + MMJJ_RS04695 0.23 -1.4
879,010 + MMJJ_RS04695 0.23 +2.0
879,062 - MMJJ_RS04695 0.26 +3.0
879,062 - MMJJ_RS04695 0.26 +1.8
879,072 - MMJJ_RS04695 0.26 +0.1
879,094 - MMJJ_RS04695 0.27 +1.3
879,163 + MMJJ_RS04695 0.31 +2.5
879,163 + MMJJ_RS04695 0.31 -1.4
879,277 - MMJJ_RS04695 0.36 -2.2
879,277 - MMJJ_RS04695 0.36 +0.2
879,326 + MMJJ_RS04695 0.39 -1.7
879,337 - MMJJ_RS04695 0.39 -2.9
879,367 - MMJJ_RS04695 0.41 +1.1
879,367 - MMJJ_RS04695 0.41 -0.5
879,367 - MMJJ_RS04695 0.41 -1.2
879,368 + MMJJ_RS04695 0.41 -2.8
879,368 + MMJJ_RS04695 0.41 -0.8
879,368 + MMJJ_RS04695 0.41 -1.7
879,370 + MMJJ_RS04695 0.41 -1.8
879,414 + MMJJ_RS04695 0.43 +0.8
879,440 + MMJJ_RS04695 0.44 +0.5
879,457 - MMJJ_RS04695 0.45 +0.2
879,475 - MMJJ_RS04695 0.46 -0.7
879,476 + MMJJ_RS04695 0.46 +1.6

Or see this region's nucleotide sequence