Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04265

Experiment: Formate N-free with 2mM Adenosine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04260 and MMJJ_RS04265 are separated by 26 nucleotidesMMJJ_RS04265 and MMJJ_RS04270 are separated by 17 nucleotidesMMJJ_RS04270 and MMJJ_RS04275 are separated by 29 nucleotides MMJJ_RS04260: MMJJ_RS04260 - molybdopterin molybdotransferase MoeA, at 793,458 to 794,585 _RS04260 MMJJ_RS04265: MMJJ_RS04265 - FmdE family protein, at 794,612 to 795,196 _RS04265 MMJJ_RS04270: MMJJ_RS04270 - DUF364 domain-containing protein, at 795,214 to 795,990 _RS04270 MMJJ_RS04275: MMJJ_RS04275 - ABC transporter ATP-binding protein, at 796,020 to 796,802 _RS04275 Position (kb) 794 795 796Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 793.725 kb on - strand, within MMJJ_RS04260at 793.725 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.759 kb on + strandat 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.761 kb on - strand, within MMJJ_RS04260at 793.762 kb on + strand, within MMJJ_RS04260at 793.762 kb on + strand, within MMJJ_RS04260at 793.791 kb on - strand, within MMJJ_RS04260at 793.815 kb on - strand, within MMJJ_RS04260at 793.815 kb on - strand, within MMJJ_RS04260at 793.849 kb on + strand, within MMJJ_RS04260at 793.850 kb on - strand, within MMJJ_RS04260at 793.851 kb on + strand, within MMJJ_RS04260at 793.865 kb on + strand, within MMJJ_RS04260at 793.875 kb on + strand, within MMJJ_RS04260at 793.900 kb on + strand, within MMJJ_RS04260at 793.900 kb on + strand, within MMJJ_RS04260at 793.907 kb on - strand, within MMJJ_RS04260at 793.907 kb on - strand, within MMJJ_RS04260at 793.908 kb on + strand, within MMJJ_RS04260at 793.912 kb on - strand, within MMJJ_RS04260at 793.912 kb on - strand, within MMJJ_RS04260at 793.913 kb on + strand, within MMJJ_RS04260at 793.917 kb on - strand, within MMJJ_RS04260at 793.917 kb on - strand, within MMJJ_RS04260at 793.918 kb on + strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 794.032 kb on + strand, within MMJJ_RS04260at 794.101 kb on + strand, within MMJJ_RS04260at 794.190 kb on + strand, within MMJJ_RS04260at 794.259 kb on - strand, within MMJJ_RS04260at 794.417 kb on - strand, within MMJJ_RS04260at 794.418 kb on + strand, within MMJJ_RS04260at 794.429 kb on + strand, within MMJJ_RS04260at 794.476 kb on - strandat 794.537 kb on - strandat 794.538 kb on + strandat 794.553 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.592 kb on + strandat 794.592 kb on + strandat 794.647 kb on - strandat 794.648 kb on + strandat 794.700 kb on + strand, within MMJJ_RS04265at 794.757 kb on - strand, within MMJJ_RS04265at 794.761 kb on - strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.819 kb on + strand, within MMJJ_RS04265at 794.835 kb on - strand, within MMJJ_RS04265at 794.863 kb on - strand, within MMJJ_RS04265at 794.890 kb on - strand, within MMJJ_RS04265at 794.978 kb on + strand, within MMJJ_RS04265at 795.019 kb on - strand, within MMJJ_RS04265at 795.020 kb on + strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.147 kb on + strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.211 kb on + strandat 795.216 kb on + strandat 795.225 kb on - strandat 795.225 kb on - strandat 795.226 kb on + strandat 795.226 kb on + strandat 795.231 kb on - strandat 795.232 kb on + strandat 795.316 kb on + strand, within MMJJ_RS04270at 795.316 kb on + strand, within MMJJ_RS04270at 795.320 kb on + strand, within MMJJ_RS04270at 795.323 kb on + strand, within MMJJ_RS04270at 795.706 kb on - strand, within MMJJ_RS04270at 795.711 kb on + strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.785 kb on + strand, within MMJJ_RS04270at 795.900 kb on + strand, within MMJJ_RS04270at 795.936 kb on - strandat 795.993 kb on - strandat 796.005 kb on + strandat 796.015 kb on + strandat 796.036 kb on + strandat 796.074 kb on - strandat 796.074 kb on - strandat 796.075 kb on + strandat 796.075 kb on + strandat 796.091 kb on - strandat 796.096 kb on + strandat 796.183 kb on + strand, within MMJJ_RS04275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
remove
793,725 - MMJJ_RS04260 0.24 -1.4
793,725 - MMJJ_RS04260 0.24 -1.3
793,758 - MMJJ_RS04260 0.27 +0.2
793,758 - MMJJ_RS04260 0.27 -0.4
793,758 - MMJJ_RS04260 0.27 -1.0
793,759 + +2.2
793,759 + MMJJ_RS04260 0.27 +1.6
793,759 + MMJJ_RS04260 0.27 +0.2
793,759 + MMJJ_RS04260 0.27 -3.3
793,759 + MMJJ_RS04260 0.27 +1.8
793,761 - MMJJ_RS04260 0.27 -0.7
793,762 + MMJJ_RS04260 0.27 -0.3
793,762 + MMJJ_RS04260 0.27 +0.1
793,791 - MMJJ_RS04260 0.30 -2.0
793,815 - MMJJ_RS04260 0.32 -2.8
793,815 - MMJJ_RS04260 0.32 +0.3
793,849 + MMJJ_RS04260 0.35 +0.0
793,850 - MMJJ_RS04260 0.35 +1.3
793,851 + MMJJ_RS04260 0.35 -1.2
793,865 + MMJJ_RS04260 0.36 +1.1
793,875 + MMJJ_RS04260 0.37 -0.5
793,900 + MMJJ_RS04260 0.39 +1.1
793,900 + MMJJ_RS04260 0.39 -3.2
793,907 - MMJJ_RS04260 0.40 +0.7
793,907 - MMJJ_RS04260 0.40 -0.4
793,908 + MMJJ_RS04260 0.40 +0.9
793,912 - MMJJ_RS04260 0.40 +0.6
793,912 - MMJJ_RS04260 0.40 +2.0
793,913 + MMJJ_RS04260 0.40 +0.7
793,917 - MMJJ_RS04260 0.41 +1.3
793,917 - MMJJ_RS04260 0.41 +1.0
793,918 + MMJJ_RS04260 0.41 +0.2
793,939 - MMJJ_RS04260 0.43 -0.4
793,939 - MMJJ_RS04260 0.43 -1.2
793,939 - MMJJ_RS04260 0.43 -0.8
793,939 - MMJJ_RS04260 0.43 -1.3
793,940 + MMJJ_RS04260 0.43 +0.7
793,940 + MMJJ_RS04260 0.43 +2.0
793,940 + MMJJ_RS04260 0.43 +1.0
794,032 + MMJJ_RS04260 0.51 +0.1
794,101 + MMJJ_RS04260 0.57 +1.8
794,190 + MMJJ_RS04260 0.65 +1.0
794,259 - MMJJ_RS04260 0.71 -1.8
794,417 - MMJJ_RS04260 0.85 +0.5
794,418 + MMJJ_RS04260 0.85 -0.3
794,429 + MMJJ_RS04260 0.86 +1.6
794,476 - +0.0
794,537 - +0.7
794,538 + -1.8
794,553 - -2.0
794,591 - +3.3
794,591 - +1.4
794,591 - +1.1
794,591 - -0.3
794,592 + +0.3
794,592 + -2.6
794,647 - +0.4
794,648 + -1.2
794,700 + MMJJ_RS04265 0.15 -1.6
794,757 - MMJJ_RS04265 0.25 -2.7
794,761 - MMJJ_RS04265 0.25 -3.2
794,762 + MMJJ_RS04265 0.26 -0.4
794,762 + MMJJ_RS04265 0.26 +2.6
794,819 + MMJJ_RS04265 0.35 +1.6
794,835 - MMJJ_RS04265 0.38 +0.2
794,863 - MMJJ_RS04265 0.43 -5.5
794,890 - MMJJ_RS04265 0.48 +0.8
794,978 + MMJJ_RS04265 0.63 +0.4
795,019 - MMJJ_RS04265 0.70 +2.6
795,020 + MMJJ_RS04265 0.70 +1.8
795,056 - MMJJ_RS04265 0.76 +0.9
795,056 - MMJJ_RS04265 0.76 +2.2
795,057 + MMJJ_RS04265 0.76 +1.3
795,057 + MMJJ_RS04265 0.76 -0.5
795,057 + MMJJ_RS04265 0.76 -1.6
795,057 + MMJJ_RS04265 0.76 +1.5
795,057 + MMJJ_RS04265 0.76 +0.6
795,057 + MMJJ_RS04265 0.76 -4.0
795,057 + MMJJ_RS04265 0.76 +0.4
795,058 - MMJJ_RS04265 0.76 -1.6
795,058 - MMJJ_RS04265 0.76 -0.7
795,085 + MMJJ_RS04265 0.81 +1.6
795,085 + MMJJ_RS04265 0.81 +0.8
795,147 + +2.3
795,185 - -0.5
795,185 - +2.6
795,185 - +1.8
795,185 - +1.1
795,185 - -0.1
795,185 - +0.3
795,186 + -0.1
795,186 + +1.1
795,186 + +0.8
795,211 + +1.1
795,216 + -1.0
795,225 - -1.4
795,225 - +0.7
795,226 + -1.3
795,226 + +1.2
795,231 - -1.7
795,232 + -1.2
795,316 + MMJJ_RS04270 0.13 +0.1
795,316 + MMJJ_RS04270 0.13 +0.2
795,320 + MMJJ_RS04270 0.14 +0.3
795,323 + MMJJ_RS04270 0.14 -2.1
795,706 - MMJJ_RS04270 0.63 -1.2
795,711 + MMJJ_RS04270 0.64 +1.4
795,784 - MMJJ_RS04270 0.73 +1.6
795,784 - MMJJ_RS04270 0.73 +1.4
795,784 - MMJJ_RS04270 0.73 +2.2
795,784 - MMJJ_RS04270 0.73 -0.7
795,785 + MMJJ_RS04270 0.73 -1.2
795,900 + MMJJ_RS04270 0.88 -3.1
795,936 - -1.6
795,993 - -0.1
796,005 + -0.8
796,015 + +1.0
796,036 + +0.8
796,074 - +2.0
796,074 - -0.9
796,075 + -0.3
796,075 + -1.2
796,091 - +0.9
796,096 + +2.1
796,183 + MMJJ_RS04275 0.21 +0.3

Or see this region's nucleotide sequence