Experiment: D-Glucose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20715 and CA265_RS20720 are separated by 5 nucleotides CA265_RS20720 and CA265_RS20725 overlap by 4 nucleotides CA265_RS20725 and CA265_RS20730 overlap by 4 nucleotides
CA265_RS20715: CA265_RS20715 - conjugal transfer protein TraG, at 5,119,680 to 5,122,130
_RS20715
CA265_RS20720: CA265_RS20720 - hypothetical protein, at 5,122,136 to 5,122,798
_RS20720
CA265_RS20725: CA265_RS20725 - hypothetical protein, at 5,122,795 to 5,123,451
_RS20725
CA265_RS20730: CA265_RS20730 - hypothetical protein, at 5,123,448 to 5,124,113
_RS20730
Position (kb) 5122
5123 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5121.249 kb on + strand, within CA265_RS20715 at 5121.300 kb on - strand, within CA265_RS20715 at 5121.422 kb on + strand, within CA265_RS20715 at 5121.478 kb on - strand, within CA265_RS20715 at 5121.534 kb on - strand, within CA265_RS20715 at 5121.534 kb on - strand, within CA265_RS20715 at 5121.544 kb on + strand, within CA265_RS20715 at 5121.544 kb on + strand, within CA265_RS20715 at 5121.545 kb on - strand, within CA265_RS20715 at 5121.545 kb on - strand, within CA265_RS20715 at 5121.545 kb on - strand, within CA265_RS20715 at 5121.545 kb on - strand, within CA265_RS20715 at 5121.549 kb on - strand, within CA265_RS20715 at 5121.643 kb on + strand, within CA265_RS20715 at 5121.648 kb on + strand, within CA265_RS20715 at 5121.649 kb on - strand, within CA265_RS20715 at 5121.743 kb on + strand, within CA265_RS20715 at 5121.744 kb on - strand, within CA265_RS20715 at 5121.903 kb on + strand at 5121.931 kb on + strand at 5121.933 kb on + strand at 5121.934 kb on - strand at 5121.955 kb on - strand at 5122.009 kb on - strand at 5122.119 kb on - strand at 5122.132 kb on + strand at 5122.135 kb on + strand at 5122.154 kb on - strand at 5122.154 kb on - strand at 5122.200 kb on - strand at 5122.234 kb on - strand, within CA265_RS20720 at 5122.355 kb on + strand, within CA265_RS20720 at 5122.356 kb on - strand, within CA265_RS20720 at 5122.356 kb on - strand, within CA265_RS20720 at 5122.356 kb on - strand, within CA265_RS20720 at 5122.357 kb on + strand, within CA265_RS20720 at 5122.415 kb on + strand, within CA265_RS20720 at 5122.416 kb on - strand, within CA265_RS20720 at 5122.433 kb on - strand, within CA265_RS20720 at 5122.433 kb on - strand, within CA265_RS20720 at 5122.434 kb on + strand, within CA265_RS20720 at 5122.435 kb on - strand, within CA265_RS20720 at 5122.545 kb on + strand, within CA265_RS20720 at 5122.670 kb on + strand, within CA265_RS20720 at 5122.670 kb on + strand, within CA265_RS20720 at 5122.682 kb on + strand, within CA265_RS20720 at 5122.682 kb on + strand, within CA265_RS20720 at 5122.683 kb on - strand, within CA265_RS20720 at 5122.736 kb on - strand at 5122.747 kb on + strand at 5122.747 kb on + strand at 5122.809 kb on + strand at 5122.810 kb on - strand at 5122.810 kb on - strand at 5122.815 kb on - strand at 5122.835 kb on + strand at 5123.079 kb on - strand, within CA265_RS20725 at 5123.089 kb on - strand, within CA265_RS20725 at 5123.121 kb on + strand, within CA265_RS20725 at 5123.122 kb on - strand, within CA265_RS20725 at 5123.122 kb on - strand, within CA265_RS20725 at 5123.187 kb on + strand, within CA265_RS20725 at 5123.187 kb on + strand, within CA265_RS20725 at 5123.201 kb on - strand at 5123.256 kb on + strand, within CA265_RS20725 at 5123.292 kb on + strand, within CA265_RS20725 at 5123.463 kb on - strand at 5123.463 kb on - strand at 5123.468 kb on - strand at 5123.477 kb on - strand at 5123.593 kb on - strand, within CA265_RS20730 at 5123.601 kb on - strand, within CA265_RS20730 at 5123.624 kb on + strand, within CA265_RS20730 at 5123.625 kb on - strand, within CA265_RS20730 at 5123.702 kb on - strand, within CA265_RS20730 at 5123.748 kb on - strand, within CA265_RS20730 at 5123.748 kb on - strand, within CA265_RS20730 at 5123.750 kb on - strand, within CA265_RS20730 at 5123.750 kb on - strand, within CA265_RS20730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 20mM (C) remove 5,121,249 + CA265_RS20715 0.64 -0.3 5,121,300 - CA265_RS20715 0.66 -2.0 5,121,422 + CA265_RS20715 0.71 -2.2 5,121,478 - CA265_RS20715 0.73 +2.9 5,121,534 - CA265_RS20715 0.76 -2.2 5,121,534 - CA265_RS20715 0.76 +0.7 5,121,544 + CA265_RS20715 0.76 +1.8 5,121,544 + CA265_RS20715 0.76 +0.2 5,121,545 - CA265_RS20715 0.76 +0.0 5,121,545 - CA265_RS20715 0.76 -1.2 5,121,545 - CA265_RS20715 0.76 +0.0 5,121,545 - CA265_RS20715 0.76 -4.0 5,121,549 - CA265_RS20715 0.76 -0.6 5,121,643 + CA265_RS20715 0.80 -0.5 5,121,648 + CA265_RS20715 0.80 +0.5 5,121,649 - CA265_RS20715 0.80 -1.2 5,121,743 + CA265_RS20715 0.84 -2.1 5,121,744 - CA265_RS20715 0.84 +0.9 5,121,903 + +0.1 5,121,931 + +1.1 5,121,933 + -1.7 5,121,934 - +0.2 5,121,955 - +0.4 5,122,009 - -0.8 5,122,119 - -0.4 5,122,132 + -0.4 5,122,135 + +1.1 5,122,154 - -0.9 5,122,154 - +1.3 5,122,200 - +0.5 5,122,234 - CA265_RS20720 0.15 -1.4 5,122,355 + CA265_RS20720 0.33 +1.5 5,122,356 - CA265_RS20720 0.33 -1.1 5,122,356 - CA265_RS20720 0.33 +0.5 5,122,356 - CA265_RS20720 0.33 -2.5 5,122,357 + CA265_RS20720 0.33 -2.6 5,122,415 + CA265_RS20720 0.42 -1.0 5,122,416 - CA265_RS20720 0.42 +0.8 5,122,433 - CA265_RS20720 0.45 -0.4 5,122,433 - CA265_RS20720 0.45 +0.5 5,122,434 + CA265_RS20720 0.45 -1.6 5,122,435 - CA265_RS20720 0.45 -3.2 5,122,545 + CA265_RS20720 0.62 -0.8 5,122,670 + CA265_RS20720 0.81 -0.4 5,122,670 + CA265_RS20720 0.81 -1.9 5,122,682 + CA265_RS20720 0.82 +0.2 5,122,682 + CA265_RS20720 0.82 -0.8 5,122,683 - CA265_RS20720 0.83 -0.2 5,122,736 - -2.6 5,122,747 + -0.1 5,122,747 + -0.4 5,122,809 + -2.9 5,122,810 - +0.2 5,122,810 - +1.3 5,122,815 - +0.2 5,122,835 + +0.6 5,123,079 - CA265_RS20725 0.43 +0.9 5,123,089 - CA265_RS20725 0.45 +0.5 5,123,121 + CA265_RS20725 0.50 -1.4 5,123,122 - CA265_RS20725 0.50 -0.9 5,123,122 - CA265_RS20725 0.50 -0.6 5,123,187 + CA265_RS20725 0.60 -2.2 5,123,187 + CA265_RS20725 0.60 +0.7 5,123,201 - -1.1 5,123,256 + CA265_RS20725 0.70 +0.5 5,123,292 + CA265_RS20725 0.76 -1.6 5,123,463 - -0.9 5,123,463 - -2.1 5,123,468 - -1.0 5,123,477 - -1.2 5,123,593 - CA265_RS20730 0.22 -0.4 5,123,601 - CA265_RS20730 0.23 +1.0 5,123,624 + CA265_RS20730 0.26 -1.5 5,123,625 - CA265_RS20730 0.27 +0.9 5,123,702 - CA265_RS20730 0.38 -0.2 5,123,748 - CA265_RS20730 0.45 -1.0 5,123,748 - CA265_RS20730 0.45 +0.5 5,123,750 - CA265_RS20730 0.45 +0.6 5,123,750 - CA265_RS20730 0.45 +1.3
Or see this region's nucleotide sequence