Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30095 and AO356_30100 overlap by 4 nucleotides AO356_30100 and AO356_30105 overlap by 19 nucleotides AO356_30105 and AO356_30110 are separated by 13 nucleotides AO356_30110 and AO356_30115 overlap by 4 nucleotides
AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791
_30095
AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693
_30100
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
AO356_30110: AO356_30110 - sarcosine oxidase subunit delta, at 7,026,930 to 7,027,232
_30110
AO356_30115: AO356_30115 - aminomethyltransferase, at 7,027,229 to 7,030,126
_30115
Position (kb) 7025
7026
7027 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7024.935 kb on + strand at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.936 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.229 kb on + strand, within AO356_30100 at 7025.258 kb on - strand, within AO356_30100 at 7025.674 kb on + strand at 7025.688 kb on + strand at 7025.762 kb on + strand at 7025.763 kb on - strand at 7025.763 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.811 kb on - strand, within AO356_30105 at 7025.811 kb on - strand, within AO356_30105 at 7025.826 kb on - strand, within AO356_30105 at 7025.826 kb on - strand, within AO356_30105 at 7025.839 kb on + strand, within AO356_30105 at 7025.840 kb on - strand, within AO356_30105 at 7025.840 kb on - strand, within AO356_30105 at 7025.864 kb on + strand, within AO356_30105 at 7025.864 kb on + strand, within AO356_30105 at 7025.916 kb on - strand, within AO356_30105 at 7025.942 kb on + strand, within AO356_30105 at 7025.943 kb on - strand, within AO356_30105 at 7026.002 kb on + strand, within AO356_30105 at 7026.003 kb on - strand, within AO356_30105 at 7026.509 kb on + strand, within AO356_30105 at 7026.510 kb on - strand, within AO356_30105 at 7026.757 kb on + strand, within AO356_30105 at 7026.985 kb on - strand, within AO356_30110 at 7026.985 kb on - strand, within AO356_30110 at 7026.985 kb on - strand, within AO356_30110 at 7027.048 kb on - strand, within AO356_30110 at 7027.051 kb on + strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.052 kb on - strand, within AO356_30110 at 7027.114 kb on - strand, within AO356_30110 at 7027.203 kb on - strand at 7027.385 kb on + strand at 7027.386 kb on - strand at 7027.386 kb on - strand at 7027.386 kb on - strand at 7027.589 kb on + strand, within AO356_30115 at 7027.589 kb on + strand, within AO356_30115 at 7027.590 kb on - strand, within AO356_30115 at 7027.592 kb on + strand, within AO356_30115 at 7027.604 kb on + strand, within AO356_30115 at 7027.604 kb on + strand, within AO356_30115 at 7027.605 kb on - strand, within AO356_30115 at 7027.709 kb on + strand, within AO356_30115 at 7027.709 kb on + strand, within AO356_30115 at 7027.838 kb on + strand, within AO356_30115 at 7027.838 kb on + strand, within AO356_30115 at 7027.839 kb on - strand, within AO356_30115
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 7,024,935 + +1.4 7,024,935 + AO356_30100 0.16 -1.1 7,024,935 + AO356_30100 0.16 +0.6 7,024,935 + AO356_30100 0.16 +0.4 7,024,935 + AO356_30100 0.16 +1.0 7,024,936 - AO356_30100 0.16 +0.5 7,025,147 - AO356_30100 0.40 +0.0 7,025,147 - AO356_30100 0.40 -0.2 7,025,229 + AO356_30100 0.49 -0.8 7,025,258 - AO356_30100 0.52 -0.3 7,025,674 + +0.2 7,025,688 + +0.8 7,025,762 + -0.1 7,025,763 - +0.5 7,025,763 - +0.7 7,025,770 - +0.4 7,025,770 - +0.9 7,025,770 - +0.7 7,025,770 - +0.1 7,025,770 - +1.6 7,025,811 - AO356_30105 0.11 -0.2 7,025,811 - AO356_30105 0.11 -1.0 7,025,826 - AO356_30105 0.12 -1.5 7,025,826 - AO356_30105 0.12 -0.2 7,025,839 + AO356_30105 0.13 +0.9 7,025,840 - AO356_30105 0.13 +0.2 7,025,840 - AO356_30105 0.13 +2.0 7,025,864 + AO356_30105 0.15 -0.5 7,025,864 + AO356_30105 0.15 -0.2 7,025,916 - AO356_30105 0.19 +1.2 7,025,942 + AO356_30105 0.21 +0.3 7,025,943 - AO356_30105 0.22 -0.3 7,026,002 + AO356_30105 0.26 -2.0 7,026,003 - AO356_30105 0.26 -0.2 7,026,509 + AO356_30105 0.67 -0.2 7,026,510 - AO356_30105 0.67 +0.4 7,026,757 + AO356_30105 0.87 +1.5 7,026,985 - AO356_30110 0.18 -0.7 7,026,985 - AO356_30110 0.18 +0.8 7,026,985 - AO356_30110 0.18 -1.0 7,027,048 - AO356_30110 0.39 -0.5 7,027,051 + AO356_30110 0.40 -0.6 7,027,052 - AO356_30110 0.40 +0.2 7,027,052 - AO356_30110 0.40 -0.5 7,027,052 - AO356_30110 0.40 +0.2 7,027,052 - AO356_30110 0.40 -0.4 7,027,114 - AO356_30110 0.61 -0.5 7,027,203 - -0.7 7,027,385 + -2.5 7,027,386 - +0.5 7,027,386 - +0.3 7,027,386 - +0.3 7,027,589 + AO356_30115 0.12 +0.5 7,027,589 + AO356_30115 0.12 -1.1 7,027,590 - AO356_30115 0.12 +0.9 7,027,592 + AO356_30115 0.13 +0.1 7,027,604 + AO356_30115 0.13 +0.3 7,027,604 + AO356_30115 0.13 +0.6 7,027,605 - AO356_30115 0.13 -0.5 7,027,709 + AO356_30115 0.17 +0.7 7,027,709 + AO356_30115 0.17 +0.8 7,027,838 + AO356_30115 0.21 +1.4 7,027,838 + AO356_30115 0.21 -0.0 7,027,839 - AO356_30115 0.21 +1.1
Or see this region's nucleotide sequence