Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29605 and AO356_29610 are separated by 57 nucleotides AO356_29610 and AO356_29615 are separated by 61 nucleotides
AO356_29605: AO356_29605 - hypothetical protein, at 6,887,966 to 6,889,519
_29605
AO356_29610: AO356_29610 - AraC family transcriptional regulator, at 6,889,577 to 6,890,593
_29610
AO356_29615: AO356_29615 - transporter, at 6,890,655 to 6,891,902
_29615
Position (kb)
6889
6890
6891 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6888.588 kb on - strand, within AO356_29605 at 6888.588 kb on - strand, within AO356_29605 at 6888.588 kb on - strand, within AO356_29605 at 6888.590 kb on + strand, within AO356_29605 at 6888.591 kb on - strand, within AO356_29605 at 6888.591 kb on - strand, within AO356_29605 at 6888.591 kb on - strand, within AO356_29605 at 6888.591 kb on - strand, within AO356_29605 at 6888.614 kb on + strand, within AO356_29605 at 6888.654 kb on - strand, within AO356_29605 at 6888.656 kb on - strand, within AO356_29605 at 6888.656 kb on - strand, within AO356_29605 at 6888.747 kb on - strand, within AO356_29605 at 6888.879 kb on - strand, within AO356_29605 at 6888.879 kb on - strand, within AO356_29605 at 6888.879 kb on - strand, within AO356_29605 at 6888.879 kb on - strand, within AO356_29605 at 6888.913 kb on + strand, within AO356_29605 at 6888.914 kb on - strand, within AO356_29605 at 6888.914 kb on - strand, within AO356_29605 at 6888.914 kb on - strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.004 kb on + strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.005 kb on - strand, within AO356_29605 at 6889.097 kb on + strand, within AO356_29605 at 6889.158 kb on - strand, within AO356_29605 at 6889.158 kb on - strand, within AO356_29605 at 6889.274 kb on + strand, within AO356_29605 at 6889.564 kb on + strand at 6889.675 kb on + strand at 6889.675 kb on + strand at 6889.675 kb on + strand at 6889.675 kb on + strand at 6889.676 kb on - strand at 6889.676 kb on - strand at 6889.677 kb on + strand at 6889.677 kb on + strand at 6889.778 kb on + strand, within AO356_29610 at 6889.778 kb on + strand, within AO356_29610 at 6889.779 kb on - strand, within AO356_29610 at 6890.172 kb on + strand, within AO356_29610 at 6890.173 kb on - strand, within AO356_29610 at 6890.185 kb on + strand, within AO356_29610 at 6890.409 kb on + strand, within AO356_29610 at 6890.409 kb on + strand, within AO356_29610 at 6890.410 kb on - strand, within AO356_29610 at 6890.775 kb on + strand at 6890.884 kb on + strand, within AO356_29615 at 6891.108 kb on - strand, within AO356_29615 at 6891.108 kb on - strand, within AO356_29615 at 6891.163 kb on - strand, within AO356_29615 at 6891.163 kb on - strand, within AO356_29615 at 6891.163 kb on - strand, within AO356_29615 at 6891.163 kb on - strand, within AO356_29615 at 6891.163 kb on - strand, within AO356_29615 at 6891.364 kb on - strand, within AO356_29615 at 6891.407 kb on - strand, within AO356_29615 at 6891.439 kb on + strand, within AO356_29615 at 6891.440 kb on - strand, within AO356_29615 at 6891.440 kb on - strand, within AO356_29615 at 6891.440 kb on - strand, within AO356_29615 at 6891.440 kb on - strand, within AO356_29615 at 6891.501 kb on - strand, within AO356_29615 at 6891.525 kb on - strand, within AO356_29615
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 6,888,588 - AO356_29605 0.40 +0.2 6,888,588 - AO356_29605 0.40 -0.3 6,888,588 - AO356_29605 0.40 -0.9 6,888,590 + AO356_29605 0.40 +0.1 6,888,591 - AO356_29605 0.40 +0.7 6,888,591 - AO356_29605 0.40 +0.9 6,888,591 - AO356_29605 0.40 +1.7 6,888,591 - AO356_29605 0.40 -0.0 6,888,614 + AO356_29605 0.42 +0.3 6,888,654 - AO356_29605 0.44 -1.0 6,888,656 - AO356_29605 0.44 +1.0 6,888,656 - AO356_29605 0.44 +1.1 6,888,747 - AO356_29605 0.50 -0.9 6,888,879 - AO356_29605 0.59 -0.5 6,888,879 - AO356_29605 0.59 -0.1 6,888,879 - AO356_29605 0.59 -0.5 6,888,879 - AO356_29605 0.59 -0.7 6,888,913 + AO356_29605 0.61 +0.3 6,888,914 - AO356_29605 0.61 -0.4 6,888,914 - AO356_29605 0.61 +0.7 6,888,914 - AO356_29605 0.61 +0.8 6,889,004 + AO356_29605 0.67 -0.1 6,889,004 + AO356_29605 0.67 +1.7 6,889,004 + AO356_29605 0.67 +0.3 6,889,004 + AO356_29605 0.67 +0.5 6,889,004 + AO356_29605 0.67 +0.4 6,889,004 + AO356_29605 0.67 +0.1 6,889,005 - AO356_29605 0.67 -0.4 6,889,005 - AO356_29605 0.67 -0.5 6,889,005 - AO356_29605 0.67 -0.4 6,889,005 - AO356_29605 0.67 -1.4 6,889,005 - AO356_29605 0.67 -0.1 6,889,005 - AO356_29605 0.67 -0.8 6,889,097 + AO356_29605 0.73 +0.1 6,889,158 - AO356_29605 0.77 -0.5 6,889,158 - AO356_29605 0.77 +0.5 6,889,274 + AO356_29605 0.84 -1.9 6,889,564 + -0.9 6,889,675 + -0.1 6,889,675 + -0.7 6,889,675 + -0.2 6,889,675 + +0.3 6,889,676 - +0.8 6,889,676 - +1.3 6,889,677 + +0.2 6,889,677 + -0.7 6,889,778 + AO356_29610 0.20 +0.8 6,889,778 + AO356_29610 0.20 +0.5 6,889,779 - AO356_29610 0.20 -0.8 6,890,172 + AO356_29610 0.59 -3.0 6,890,173 - AO356_29610 0.59 -0.1 6,890,185 + AO356_29610 0.60 -0.3 6,890,409 + AO356_29610 0.82 -1.1 6,890,409 + AO356_29610 0.82 -0.4 6,890,410 - AO356_29610 0.82 +0.9 6,890,775 + -0.4 6,890,884 + AO356_29615 0.18 -0.2 6,891,108 - AO356_29615 0.36 -1.0 6,891,108 - AO356_29615 0.36 +1.2 6,891,163 - AO356_29615 0.41 +2.0 6,891,163 - AO356_29615 0.41 +1.2 6,891,163 - AO356_29615 0.41 +1.5 6,891,163 - AO356_29615 0.41 +1.4 6,891,163 - AO356_29615 0.41 +0.5 6,891,364 - AO356_29615 0.57 -0.3 6,891,407 - AO356_29615 0.60 +1.1 6,891,439 + AO356_29615 0.63 +0.0 6,891,440 - AO356_29615 0.63 +0.4 6,891,440 - AO356_29615 0.63 -2.0 6,891,440 - AO356_29615 0.63 -2.3 6,891,440 - AO356_29615 0.63 +0.8 6,891,501 - AO356_29615 0.68 +0.4 6,891,525 - AO356_29615 0.70 +1.1
Or see this region's nucleotide sequence