Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28005

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27995 and AO356_28000 are separated by 147 nucleotidesAO356_28000 and AO356_28005 are separated by 113 nucleotidesAO356_28005 and AO356_28010 are separated by 383 nucleotides AO356_27995: AO356_27995 - thioredoxin reductase, at 6,390,998 to 6,391,891 _27995 AO356_28000: AO356_28000 - Rrf2 family transcriptional regulator, at 6,392,039 to 6,392,506 _28000 AO356_28005: AO356_28005 - malate:quinone oxidoreductase, at 6,392,620 to 6,394,263 _28005 AO356_28010: AO356_28010 - hypothetical protein, at 6,394,647 to 6,395,852 _28010 Position (kb) 6392 6393 6394 6395Strain fitness (log2 ratio) -2 -1 0 1 2at 6391.808 kb on + strandat 6391.809 kb on - strandat 6391.809 kb on - strandat 6391.809 kb on - strandat 6391.857 kb on + strandat 6391.858 kb on - strandat 6391.945 kb on - strandat 6392.192 kb on + strand, within AO356_28000at 6392.192 kb on + strand, within AO356_28000at 6392.193 kb on - strand, within AO356_28000at 6392.519 kb on + strandat 6392.622 kb on - strandat 6392.741 kb on + strandat 6392.772 kb on + strandat 6392.792 kb on + strand, within AO356_28005at 6393.063 kb on - strand, within AO356_28005at 6393.063 kb on - strand, within AO356_28005at 6393.119 kb on + strand, within AO356_28005at 6393.134 kb on + strand, within AO356_28005at 6393.204 kb on - strand, within AO356_28005at 6393.414 kb on - strand, within AO356_28005at 6393.530 kb on + strand, within AO356_28005at 6393.620 kb on + strand, within AO356_28005at 6393.620 kb on + strand, within AO356_28005at 6393.621 kb on - strand, within AO356_28005at 6393.761 kb on + strand, within AO356_28005at 6393.761 kb on + strand, within AO356_28005at 6394.001 kb on + strand, within AO356_28005at 6394.001 kb on + strand, within AO356_28005at 6394.269 kb on + strandat 6394.316 kb on + strandat 6394.317 kb on - strandat 6394.379 kb on + strandat 6394.379 kb on + strandat 6394.379 kb on + strandat 6394.412 kb on + strandat 6394.413 kb on - strandat 6394.438 kb on + strandat 6394.439 kb on - strandat 6394.439 kb on - strandat 6394.439 kb on - strandat 6394.439 kb on - strandat 6394.497 kb on - strandat 6394.529 kb on + strandat 6394.529 kb on + strandat 6394.530 kb on - strandat 6394.530 kb on - strandat 6394.534 kb on - strandat 6394.563 kb on + strandat 6394.602 kb on + strandat 6394.655 kb on - strandat 6394.655 kb on - strandat 6394.757 kb on + strandat 6394.758 kb on - strandat 6394.780 kb on + strand, within AO356_28010at 6394.781 kb on - strand, within AO356_28010at 6394.784 kb on + strand, within AO356_28010at 6394.822 kb on + strand, within AO356_28010at 6394.822 kb on + strand, within AO356_28010at 6394.823 kb on - strand, within AO356_28010at 6394.840 kb on + strand, within AO356_28010at 6394.840 kb on + strand, within AO356_28010at 6394.840 kb on + strand, within AO356_28010at 6394.841 kb on - strand, within AO356_28010at 6394.841 kb on - strand, within AO356_28010at 6394.841 kb on - strand, within AO356_28010at 6394.841 kb on - strand, within AO356_28010at 6394.841 kb on - strand, within AO356_28010at 6394.842 kb on + strand, within AO356_28010at 6394.842 kb on + strand, within AO356_28010at 6394.842 kb on + strand, within AO356_28010at 6394.843 kb on - strand, within AO356_28010at 6394.843 kb on - strand, within AO356_28010at 6394.855 kb on + strand, within AO356_28010at 6394.855 kb on + strand, within AO356_28010at 6394.856 kb on - strand, within AO356_28010at 6394.947 kb on + strand, within AO356_28010at 6394.948 kb on - strand, within AO356_28010at 6395.215 kb on + strand, within AO356_28010

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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6,391,808 + +0.7
6,391,809 - +2.0
6,391,809 - +1.3
6,391,809 - +0.1
6,391,857 + +0.1
6,391,858 - +0.7
6,391,945 - -1.1
6,392,192 + AO356_28000 0.33 +1.3
6,392,192 + AO356_28000 0.33 +0.7
6,392,193 - AO356_28000 0.33 -0.1
6,392,519 + -0.7
6,392,622 - +0.9
6,392,741 + -0.6
6,392,772 + -1.0
6,392,792 + AO356_28005 0.10 -0.2
6,393,063 - AO356_28005 0.27 -0.7
6,393,063 - AO356_28005 0.27 -0.1
6,393,119 + AO356_28005 0.30 -0.9
6,393,134 + AO356_28005 0.31 +0.2
6,393,204 - AO356_28005 0.36 -0.9
6,393,414 - AO356_28005 0.48 -1.3
6,393,530 + AO356_28005 0.55 -0.8
6,393,620 + AO356_28005 0.61 -0.8
6,393,620 + AO356_28005 0.61 -1.8
6,393,621 - AO356_28005 0.61 -0.6
6,393,761 + AO356_28005 0.69 +0.5
6,393,761 + AO356_28005 0.69 -0.5
6,394,001 + AO356_28005 0.84 -0.5
6,394,001 + AO356_28005 0.84 +1.0
6,394,269 + -1.1
6,394,316 + -2.0
6,394,317 - -0.2
6,394,379 + -0.2
6,394,379 + +0.8
6,394,379 + -1.3
6,394,412 + +0.1
6,394,413 - +0.0
6,394,438 + -0.7
6,394,439 - -0.2
6,394,439 - +2.3
6,394,439 - +0.3
6,394,439 - +0.4
6,394,497 - +0.8
6,394,529 + -0.5
6,394,529 + +1.3
6,394,530 - -0.9
6,394,530 - +1.2
6,394,534 - +0.2
6,394,563 + -0.6
6,394,602 + -2.1
6,394,655 - -0.8
6,394,655 - -0.5
6,394,757 + -0.8
6,394,758 - +0.6
6,394,780 + AO356_28010 0.11 +0.5
6,394,781 - AO356_28010 0.11 -1.8
6,394,784 + AO356_28010 0.11 +0.4
6,394,822 + AO356_28010 0.15 -2.1
6,394,822 + AO356_28010 0.15 -0.9
6,394,823 - AO356_28010 0.15 +0.9
6,394,840 + AO356_28010 0.16 -0.5
6,394,840 + AO356_28010 0.16 -0.0
6,394,840 + AO356_28010 0.16 -0.6
6,394,841 - AO356_28010 0.16 -0.1
6,394,841 - AO356_28010 0.16 +0.5
6,394,841 - AO356_28010 0.16 -0.0
6,394,841 - AO356_28010 0.16 -0.2
6,394,841 - AO356_28010 0.16 +0.8
6,394,842 + AO356_28010 0.16 +0.0
6,394,842 + AO356_28010 0.16 -0.3
6,394,842 + AO356_28010 0.16 -0.3
6,394,843 - AO356_28010 0.16 -0.8
6,394,843 - AO356_28010 0.16 -1.7
6,394,855 + AO356_28010 0.17 -1.6
6,394,855 + AO356_28010 0.17 +0.4
6,394,856 - AO356_28010 0.17 -0.3
6,394,947 + AO356_28010 0.25 +0.0
6,394,948 - AO356_28010 0.25 -0.4
6,395,215 + AO356_28010 0.47 -0.4

Or see this region's nucleotide sequence