Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27455

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27450 and AO356_27455 are separated by 120 nucleotidesAO356_27455 and AO356_27460 are separated by 123 nucleotides AO356_27450: AO356_27450 - fumarylacetoacetate hydrolase, at 6,254,616 to 6,255,794 _27450 AO356_27455: AO356_27455 - LysR family transcriptional regulator, at 6,255,915 to 6,256,901 _27455 AO356_27460: AO356_27460 - galactonate dehydratase, at 6,257,025 to 6,258,572 _27460 Position (kb) 6255 6256 6257Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6254.984 kb on + strand, within AO356_27450at 6254.985 kb on - strand, within AO356_27450at 6254.985 kb on - strand, within AO356_27450at 6255.290 kb on + strand, within AO356_27450at 6255.290 kb on + strand, within AO356_27450at 6255.290 kb on + strand, within AO356_27450at 6255.291 kb on - strand, within AO356_27450at 6255.291 kb on - strand, within AO356_27450at 6255.291 kb on - strand, within AO356_27450at 6255.574 kb on + strand, within AO356_27450at 6255.833 kb on + strandat 6255.932 kb on + strandat 6255.933 kb on - strandat 6255.933 kb on - strandat 6255.986 kb on + strandat 6255.986 kb on + strandat 6255.986 kb on + strandat 6255.987 kb on - strandat 6255.987 kb on - strandat 6255.987 kb on - strandat 6255.987 kb on - strandat 6256.056 kb on - strand, within AO356_27455at 6256.056 kb on - strand, within AO356_27455at 6256.148 kb on - strand, within AO356_27455at 6256.164 kb on - strand, within AO356_27455at 6256.234 kb on + strand, within AO356_27455at 6256.235 kb on - strand, within AO356_27455at 6256.539 kb on + strand, within AO356_27455at 6256.540 kb on - strand, within AO356_27455at 6256.540 kb on - strand, within AO356_27455at 6256.540 kb on - strand, within AO356_27455at 6256.764 kb on + strand, within AO356_27455at 6256.772 kb on + strand, within AO356_27455at 6256.773 kb on - strand, within AO356_27455at 6256.817 kb on + strandat 6256.817 kb on + strandat 6256.934 kb on + strandat 6256.957 kb on + strandat 6256.958 kb on - strandat 6256.987 kb on + strandat 6257.172 kb on - strandat 6257.251 kb on + strand, within AO356_27460at 6257.251 kb on + strand, within AO356_27460at 6257.252 kb on - strand, within AO356_27460at 6257.409 kb on + strand, within AO356_27460at 6257.409 kb on + strand, within AO356_27460at 6257.409 kb on + strand, within AO356_27460at 6257.410 kb on - strand, within AO356_27460at 6257.418 kb on - strand, within AO356_27460at 6257.418 kb on - strand, within AO356_27460at 6257.424 kb on - strand, within AO356_27460at 6257.424 kb on - strand, within AO356_27460at 6257.424 kb on - strand, within AO356_27460at 6257.508 kb on + strand, within AO356_27460

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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6,254,984 + AO356_27450 0.31 -2.2
6,254,985 - AO356_27450 0.31 -0.1
6,254,985 - AO356_27450 0.31 +0.6
6,255,290 + AO356_27450 0.57 +0.1
6,255,290 + AO356_27450 0.57 +0.2
6,255,290 + AO356_27450 0.57 +0.3
6,255,291 - AO356_27450 0.57 -0.9
6,255,291 - AO356_27450 0.57 +0.1
6,255,291 - AO356_27450 0.57 -0.1
6,255,574 + AO356_27450 0.81 +1.8
6,255,833 + -0.2
6,255,932 + +0.0
6,255,933 - -1.2
6,255,933 - -1.0
6,255,986 + +0.5
6,255,986 + +0.9
6,255,986 + +0.3
6,255,987 - -0.2
6,255,987 - +0.2
6,255,987 - +0.8
6,255,987 - +0.5
6,256,056 - AO356_27455 0.14 +0.3
6,256,056 - AO356_27455 0.14 +3.2
6,256,148 - AO356_27455 0.24 -1.1
6,256,164 - AO356_27455 0.25 -0.1
6,256,234 + AO356_27455 0.32 +0.4
6,256,235 - AO356_27455 0.32 -0.4
6,256,539 + AO356_27455 0.63 -1.6
6,256,540 - AO356_27455 0.63 +1.7
6,256,540 - AO356_27455 0.63 -0.7
6,256,540 - AO356_27455 0.63 +0.5
6,256,764 + AO356_27455 0.86 +1.2
6,256,772 + AO356_27455 0.87 -0.8
6,256,773 - AO356_27455 0.87 +0.9
6,256,817 + +0.3
6,256,817 + +0.2
6,256,934 + +0.5
6,256,957 + -1.1
6,256,958 - -0.4
6,256,987 + +0.9
6,257,172 - -0.0
6,257,251 + AO356_27460 0.15 -0.6
6,257,251 + AO356_27460 0.15 +0.3
6,257,252 - AO356_27460 0.15 +0.1
6,257,409 + AO356_27460 0.25 -0.1
6,257,409 + AO356_27460 0.25 +0.3
6,257,409 + AO356_27460 0.25 +0.3
6,257,410 - AO356_27460 0.25 +0.2
6,257,418 - AO356_27460 0.25 -0.3
6,257,418 - AO356_27460 0.25 -0.7
6,257,424 - AO356_27460 0.26 +1.7
6,257,424 - AO356_27460 0.26 -1.3
6,257,424 - AO356_27460 0.26 +0.5
6,257,508 + AO356_27460 0.31 +1.2

Or see this region's nucleotide sequence