Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27035

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27025 and AO356_27030 are separated by 141 nucleotidesAO356_27030 and AO356_27035 are separated by 112 nucleotidesAO356_27035 and AO356_27040 are separated by 340 nucleotides AO356_27025: AO356_27025 - peptidase, at 6,158,740 to 6,160,518 _27025 AO356_27030: AO356_27030 - alkaline proteinase inhibitor, at 6,160,660 to 6,161,097 _27030 AO356_27035: AO356_27035 - serine 3-dehydrogenase, at 6,161,210 to 6,162,664 _27035 AO356_27040: AO356_27040 - LysR family transcriptional regulator, at 6,163,005 to 6,163,901 _27040 Position (kb) 6161 6162 6163Strain fitness (log2 ratio) -2 -1 0 1 2at 6160.218 kb on - strand, within AO356_27025at 6160.280 kb on - strand, within AO356_27025at 6160.318 kb on + strand, within AO356_27025at 6160.377 kb on - strandat 6160.390 kb on - strandat 6160.391 kb on + strandat 6160.392 kb on - strandat 6160.392 kb on - strandat 6160.461 kb on + strandat 6160.462 kb on - strandat 6160.462 kb on - strandat 6160.480 kb on - strandat 6160.560 kb on - strandat 6160.560 kb on - strandat 6160.653 kb on + strandat 6160.681 kb on - strandat 6160.681 kb on - strandat 6160.695 kb on + strandat 6160.696 kb on - strandat 6160.696 kb on - strandat 6160.699 kb on + strandat 6160.700 kb on - strandat 6160.804 kb on - strand, within AO356_27030at 6160.994 kb on - strand, within AO356_27030at 6161.073 kb on + strandat 6161.092 kb on - strandat 6161.161 kb on + strandat 6161.161 kb on + strandat 6161.161 kb on + strandat 6161.162 kb on - strandat 6161.196 kb on - strandat 6161.206 kb on - strandat 6161.206 kb on - strandat 6161.211 kb on + strandat 6161.830 kb on - strand, within AO356_27035at 6161.917 kb on - strand, within AO356_27035at 6161.970 kb on + strand, within AO356_27035at 6161.971 kb on - strand, within AO356_27035at 6162.006 kb on + strand, within AO356_27035at 6162.006 kb on + strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.007 kb on - strand, within AO356_27035at 6162.021 kb on + strand, within AO356_27035at 6162.021 kb on + strand, within AO356_27035at 6162.048 kb on + strand, within AO356_27035at 6162.049 kb on - strand, within AO356_27035at 6162.144 kb on + strand, within AO356_27035at 6162.144 kb on + strand, within AO356_27035at 6162.144 kb on + strand, within AO356_27035at 6162.163 kb on - strand, within AO356_27035at 6162.163 kb on - strand, within AO356_27035at 6162.204 kb on + strand, within AO356_27035at 6162.205 kb on - strand, within AO356_27035at 6162.205 kb on - strand, within AO356_27035at 6162.240 kb on + strand, within AO356_27035at 6162.240 kb on + strand, within AO356_27035at 6162.240 kb on + strand, within AO356_27035at 6162.241 kb on - strand, within AO356_27035at 6162.421 kb on + strand, within AO356_27035at 6162.421 kb on + strand, within AO356_27035at 6162.422 kb on - strand, within AO356_27035at 6162.422 kb on - strand, within AO356_27035at 6162.422 kb on - strand, within AO356_27035at 6162.422 kb on - strand, within AO356_27035at 6162.423 kb on + strand, within AO356_27035at 6162.423 kb on + strand, within AO356_27035at 6162.424 kb on - strand, within AO356_27035at 6162.424 kb on - strand, within AO356_27035at 6162.510 kb on + strand, within AO356_27035at 6162.510 kb on + strand, within AO356_27035at 6162.552 kb on + strandat 6162.552 kb on + strandat 6162.569 kb on - strandat 6162.589 kb on + strandat 6162.589 kb on + strandat 6162.665 kb on - strandat 6162.698 kb on + strandat 6162.753 kb on + strandat 6162.753 kb on + strandat 6162.754 kb on - strandat 6162.754 kb on - strandat 6162.754 kb on - strandat 6162.823 kb on + strandat 6162.824 kb on - strandat 6162.824 kb on - strandat 6162.833 kb on - strandat 6162.839 kb on + strandat 6162.840 kb on - strandat 6162.925 kb on - strandat 6162.928 kb on + strandat 6162.929 kb on - strandat 6162.963 kb on + strandat 6162.995 kb on + strandat 6162.996 kb on - strandat 6162.998 kb on + strandat 6162.999 kb on - strandat 6163.013 kb on + strandat 6163.014 kb on - strandat 6163.014 kb on - strandat 6163.056 kb on + strandat 6163.056 kb on + strandat 6163.057 kb on - strandat 6163.162 kb on + strand, within AO356_27040at 6163.336 kb on + strand, within AO356_27040at 6163.616 kb on + strand, within AO356_27040at 6163.616 kb on + strand, within AO356_27040at 6163.617 kb on - strand, within AO356_27040at 6163.617 kb on - strand, within AO356_27040

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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6,160,218 - AO356_27025 0.83 +0.5
6,160,280 - AO356_27025 0.87 +0.5
6,160,318 + AO356_27025 0.89 -0.6
6,160,377 - +0.3
6,160,390 - -2.4
6,160,391 + -0.4
6,160,392 - -1.1
6,160,392 - -0.8
6,160,461 + +0.6
6,160,462 - -0.9
6,160,462 - -0.9
6,160,480 - +0.6
6,160,560 - +0.2
6,160,560 - -0.1
6,160,653 + +1.8
6,160,681 - -0.5
6,160,681 - -0.3
6,160,695 + +0.7
6,160,696 - +0.7
6,160,696 - +1.1
6,160,699 + +1.3
6,160,700 - -0.4
6,160,804 - AO356_27030 0.33 +1.3
6,160,994 - AO356_27030 0.76 -0.6
6,161,073 + +0.2
6,161,092 - -0.0
6,161,161 + +0.3
6,161,161 + -0.2
6,161,161 + -1.1
6,161,162 - -0.5
6,161,196 - -1.4
6,161,206 - -0.5
6,161,206 - -0.8
6,161,211 + +0.9
6,161,830 - AO356_27035 0.43 +0.9
6,161,917 - AO356_27035 0.49 +1.5
6,161,970 + AO356_27035 0.52 +1.8
6,161,971 - AO356_27035 0.52 -1.1
6,162,006 + AO356_27035 0.55 +0.4
6,162,006 + AO356_27035 0.55 +0.4
6,162,007 - AO356_27035 0.55 +0.9
6,162,007 - AO356_27035 0.55 +0.2
6,162,007 - AO356_27035 0.55 -0.3
6,162,007 - AO356_27035 0.55 +0.5
6,162,007 - AO356_27035 0.55 -0.1
6,162,021 + AO356_27035 0.56 +0.4
6,162,021 + AO356_27035 0.56 +0.7
6,162,048 + AO356_27035 0.58 +0.4
6,162,049 - AO356_27035 0.58 +1.0
6,162,144 + AO356_27035 0.64 +0.1
6,162,144 + AO356_27035 0.64 +0.6
6,162,144 + AO356_27035 0.64 -1.0
6,162,163 - AO356_27035 0.65 -0.1
6,162,163 - AO356_27035 0.65 +0.5
6,162,204 + AO356_27035 0.68 +0.6
6,162,205 - AO356_27035 0.68 -0.1
6,162,205 - AO356_27035 0.68 +1.2
6,162,240 + AO356_27035 0.71 +0.6
6,162,240 + AO356_27035 0.71 +1.3
6,162,240 + AO356_27035 0.71 +0.3
6,162,241 - AO356_27035 0.71 -0.6
6,162,421 + AO356_27035 0.83 -0.9
6,162,421 + AO356_27035 0.83 -0.8
6,162,422 - AO356_27035 0.83 +0.1
6,162,422 - AO356_27035 0.83 +0.2
6,162,422 - AO356_27035 0.83 -0.9
6,162,422 - AO356_27035 0.83 -1.7
6,162,423 + AO356_27035 0.83 -0.7
6,162,423 + AO356_27035 0.83 +0.5
6,162,424 - AO356_27035 0.83 +0.8
6,162,424 - AO356_27035 0.83 +0.5
6,162,510 + AO356_27035 0.89 -1.4
6,162,510 + AO356_27035 0.89 +0.1
6,162,552 + +1.3
6,162,552 + +0.3
6,162,569 - +0.4
6,162,589 + +0.8
6,162,589 + -0.2
6,162,665 - +0.6
6,162,698 + +0.6
6,162,753 + +1.5
6,162,753 + +1.8
6,162,754 - -0.2
6,162,754 - -1.0
6,162,754 - +1.6
6,162,823 + +1.2
6,162,824 - -0.7
6,162,824 - +0.2
6,162,833 - -0.5
6,162,839 + +0.8
6,162,840 - -0.1
6,162,925 - -0.2
6,162,928 + -0.9
6,162,929 - -0.0
6,162,963 + +0.4
6,162,995 + +1.4
6,162,996 - -1.5
6,162,998 + +0.2
6,162,999 - -0.3
6,163,013 + -0.1
6,163,014 - +0.4
6,163,014 - -1.4
6,163,056 + -0.3
6,163,056 + -0.3
6,163,057 - +0.2
6,163,162 + AO356_27040 0.18 +0.4
6,163,336 + AO356_27040 0.37 +1.3
6,163,616 + AO356_27040 0.68 +2.0
6,163,616 + AO356_27040 0.68 +1.1
6,163,617 - AO356_27040 0.68 -0.2
6,163,617 - AO356_27040 0.68 -1.4

Or see this region's nucleotide sequence